Community Diversity and Ecosystem Functioning Department "DCFE" - iEES Paris

The DCFE Department brings together 4 teams whose competences make it possible to structure research based on conceptual and methodological exchanges on the theme of the interrelations between biodiversity – structure – functioning of ecosystems and their dynamics.
These exchanges are the result of a common reflection based on a scientific animation as well as a pooling of equipment and technical platforms, both intended as transversal between the teams of the Department.

Research within the Department is conducted at multiple levels of integration : from cells to ecosystems, from environmental constraints to ecological and evolutionary dynamics. A particular effort focuses on the platforms for modelling and simulation, for physicochemical analysis of nutrient stocks and flows (carbon, nitrogen, phosphorus …) and for microbiology.


The DCFE Department proposes to bring out several lines of research by aggregating the competences peculiar to the teams :

  • Link the functioning of interaction networks, the microbial loop and related ecological functions (e.g. primary production, mineralization, nitrification) ;
  • Compare very different ecosystems (aquatic vs. terrestrial ecosystems, natural vs. anthropogenic ecosystems (e.g. urban, agrosystems)) ;
  • Analyze the impact of natural and anthropic disturbances on ecological interaction networks and extract indicators of stability (resistance, resilience) ;
  • Understand the role of the spatial organization of populations in the functioning of networks and ecosystems at fine scales (microbial populations), intermediate scales (plots, lakes, mesocosms) and wide scales (landscape, watersheds) ;
  • Cross social demands and ecosystem functioning by translating these concepts in terms of ecosystem services.

Analyze the interactions between biodiversity, community dynamics, ecosystem functioning and ecosystem services.

Teams of "DCFE" department

Biogeography and Diversity of Interactions in Soil

"BioDIS"

Microbial Communities in Continental ecosystems

"CoMiC"

Ecology and Evolution of Interaction Networks

"EERI"

Integrative Ecology: from Mechanisms to Ecosystem services

"EMS"

Publications of department

Only applies to publications from 2017 to present. To see all the publications go to the Publications page.

RéférenceDOI, liens hal et pdfJournalÉquipes et départements impliqués
Fourcade Y.* (2021) Fine-tuning niche models matters in invasion ecology. A lesson from the land planarian Obama nungara. Ecological Modelling, 457: 109686,
10.1016/j.ecolmodel.2021.109686Ecological ModellingBioDISDCFE
Zhang, N., Nunan, N.*, Hirsch, P.R., Sun B., Zhou J., Liang Y. (2021) Theory of microbial coexistence in promoting soil–plant ecosystem health. Biology & Fertility of Soils, (sous presse)​
10.1007/s00374-021-01586-wBiology & Fertility of SoilsBioDISDCFE
Goulnik J,, Plantureux S..; Dajoz I.*. & Michelot-Antalik, A (2021) Using Matching Traits to Study the Impacts of Land-Use Intensification on Plant–Pollinator Interactions in European Grasslands: A Review. Insects 2021,12(8), 680; 
10.3390/insects12080680
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Insects
EERIDCFE
Radujković, D., Verbruggen, E., Seabloom, E., Bahn, M., Biederman, L., Borer, E., Boughton, E., Catford, J., Campioli, M., Donohue, I., Ebeling, A., Eskelinen, A., Fay, P., Hansart, A., Knops, J., MacDougall, A., Ohlert, T., Olde Venterink, H., Raynaud, X.*, Risch, A., Roscher, C., Schuetz, M., Silveira, M.L., Stevens, C., Van Sundert, K., Virtanen, R., Wardle, G., Wragg, P., Vicca, S., (2021). Soil properties as key predictors of global grassland production: have we overlooked micronutrients? Ecology Letters 1–13.
10.1111/ele.13894
Ecology Letters
EMSDCFE
​Mbé, B., Monga, O., Pot, V., Otten, W., Hecht, F., Raynaud, X.*, Nunan, N.*, Chenu, C., Baveye, P.C., & Garnier, P. 2021. Scenario modelling of carbon mineralization in3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria. European Journal of Soil Science. 10.1111/ejss.13144European Journal of Soil ScienceBioDISDCFE ; EERIDCFE ; EMSDCFE
​Bettarel Y, Boudin E, Halary S, Auguet J, Péronnin J, Bouvier T, Rochelle-Newall E*, Bui V` and Desnues C (2021) The Hungry Snail, the Fragile Coral, and the Friendly Microbe. Front. Young Minds. 9:573856. doi: 10.3389/frym.2021.57385610.3389/frym.2021.573856Frontiers for Young MindsCoMiCDCFE
Harvey E., Marleau J., Gounand I.*,Leroux S., Firkowski C.R., Altermatt F., Blanchet F.G., Cazelles K., Chu C., D’Aloia C., Donelle L., Gravel D., Guichard F., McCann K., Ruppert J., Ward C., Fortin M.-J. (2021)  A general meta-ecosystem model to predict ecosystem function at landscape extents. Authorea Preprints. DOI: 10.22541/au.162799968.80128369/v1. 10.22541/au.162799968.80128369/v1Authorea PreprintsEERIDCFE
​Hugoni M, Nunan N*, Thioulouse J, Dubost A, Abrouk D, Martins JMF, Goffner D, Prigent-Combaret C, Grundmann G (2021) Small-Scale Variability in Bacterial Community Structure in Different Soil Types. Microbial Ecology (sous presse)10.1007/s00248-020-01660-0
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Microbial EcologyBioDISDCFE
​Nakhle, P.; Boithias, L.; Pando-Bahuon, A*.; Thammahacksa,C.`; Gallion, N.; Sounyafong, P`.; Silvera, N*.; Latsachack, K.`; Soulileuth,B.`; Rochelle-Newall, E.J*.; Marcangeli, Y;* Pierret, A*; Ribolzi, O*. Decay Rate of Escherichia coli in a
Mountainous Tropical Headwater Wetland. Water 2021, 13, 2068., https://doi.org/10.3390/w13152068
10.3390/w13152068WaterBioDISDCFE ; CoMiCDCFE ; EMSDCFE ; FESTSols_ZC
​Monard C., Jean-Pierre C., Cluzeau D., Le Garrec J.-L., Hellequin E., Hoeffner K., Humbert G.^, Jung V., Le Lann C., Nicolai A., 2021. Short-Term Temporal Dynamics of VOC Emissions by Soil Systems in Different Biotopes. Front. Environ. Sci. 9, 255. https://doi.org/10.3389/FENVS.2021.65070110.3389/FENVS.2021.650701
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Frontiers in Environmental ScienceEMSDCFE
​Srikanthasamy T.~,Barot S.*,Koffi F.`,Tambosco K^,Marcangeli Y*,Carmignac D.*,N’Dri A. B.`,Gervaix J.,Le Roux X.,Lata J-C.* (2021) Short-term impact of fire on the total soil microbial and nitrifier communities in a wet savanna, Ecology and Evolution

10.1002/ece3.7661Ecology and EvolutionEMSDCFE ; CoMiCDCFE
Fourcade, Y*, Astrom S, Öckinger E (2021) Decline of parasitic and habitat-specialist species drives taxonomic, phylogenetic and functional homogenization of sub-alpine bumblebee communities. Oecologia, 196: 905-917, 10.1007/s00442-021-04970-310.1007/s00442-021-04970-3OecologiaBioDISDCFE
Edeline, E & Loeuille, N* (2021) Size-dependent eco-evolutionary feedback loops in exploited ecosystems. Recommended by PCI Ecology, accepted in Oikos 10.1111/oik.08592
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OikosEERIDCFE
​Pédron J*, Schaerer S, Kellenberger I, Van Gijsegem F* (20021) Early Emergence of Dickeya solani Revealed by Analysis of Dickeya Diversity of Potato Blackleg and Soft Rot Causing Pathogens in Switzerland. Microorganisms 2021, 9, 1187, 10.3390/microorganisms9061187
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MicroorganismsCoMiCDCFE
​Audry, S., H. Ateba Bessa, J.-P. Bedimo Bedimo, J.-L. Boeglin, L. Boithias, J.-J. Braun, B. Dupre, M. Faucheux, C. Lagane, J.-C. Marechal, J. R. Ndam-Ngoupayou`, B. Nka Nnomo`, J. Nlozoa`, J.-C. Ntonga`, O. Ribolzi, J. Riotte, E. Rochelle-Newall* and L. Ruiz (2021). “The Multiscale TROPIcal CatchmentS critical zone observatory M-TROPICS dataset I: The Nyong River Basin, Cameroon.” Hydrological Processes: e14138. 10.1002/hyp.14138Hydrological ProcessesCoMiCDCFE
​Riotte, J., Ruiz, L., Audry, S., Baud, B., Bedimo Bedimo, J.-P., Boithias, L., Braun, J.-J., Dupre, B., Faucheux, M., Lagane, C., Marechal, J.-C., Moger, H., Mohan Kumar, M.S.`, Parate, H., Ribolzi, O., Rochelle-Newall, E.*, Sriramulu, B.`, Varma, M.R.R.` and Sekhar, M`.  2021.  The Multiscale TROPIcal CatchmentS critical zone observatory M-TROPICS dataset III: hydro-geochemical monitoring of the Mule Hole catchment, south India. 2021. Hydrological Processes, e14196. 10.1002/hyp.14196Hydrological ProcessesCoMiCDCFE
​Helen RP Phillips, Elizabeth M Bach, Marie LC Bartz, Joanne M Bennett, Rémy Beugnon, Maria JI Briones, George G Brown, Olga Ferlian, Konstantin B Gongalsky, Carlos A Guerra, Birgitta König-Ries, Julia J Krebs, Alberto Orgiazzi, Kelly S Ramirez, David J Russell, Benjamin Schwarz, Diana H Wall, Ulrich Brose, Thibaud Decaëns, Patrick Lavelle, Michel Loreau, Jérôme Mathieu*, Christian Mulder, Wim H van der Putten, Matthias C Rillig, Madhav P Thakur, Franciska T de Vries, David A Wardle, Christian Ammer, Sabine Ammer, Miwa Arai, Fredrick O Ayuke, Geoff H Baker, Dilmar Baretta, Dietmar Barkusky, Robin Beauséjour, Jose C Bedano, Klaus Birkhofer, Eric Blanchart, Bernd Blossey, Thomas Bolger, Robert L Bradley, Michel Brossard, James C Burtis, Yvan Capowiez, Timothy R Cavagnaro, Amy Choi, Julia Clause, Daniel Cluzeau, Anja Coors, Felicity V Crotty, Jasmine M Crumsey, Andrea Dávalos, Darío J Díaz Cosín, Annise M Dobson, Anahí Domínguez, Andrés Esteban Duhour, Nick van Eekeren, Christoph Emmerling, Liliana B Falco, Rosa Fernández, Steven J Fonte, Carlos Fragoso, André LC Franco, Abegail Fusilero, Anna P Geraskina, Shaieste Gholami, Grizelle González, Michael J Gundale, Mónica Gutiérrez López, Branimir K Hackenberger, Davorka K Hackenberger, Luis M Hernández, Jeff R Hirth, Takuo Hishi, Andrew R Holdsworth, Martin Holmstrup, Kristine N Hopfensperger, Esperanza Huerta Lwanga, Veikko Huhta, Tunsisa T Hurisso, Basil V Iannone, Madalina Iordache, Ulrich Irmler, Mari Ivask, Juan B Jesús, Jodi L Johnson-Maynard, Monika Joschko, Nobuhiro Kaneko, Radoslava Kanianska, Aidan M Keith, Maria L Kernecker, Armand W Koné, Yahya Kooch, Sanna T Kukkonen, H Lalthanzara, Daniel R Lammel, Iurii M Lebedev, Edith Le Cadre, Noa K Lincoln, Danilo López-Hernández, Scott R Loss, Raphael Marichal, Radim Matula, Yukio Minamiya, Jan Hendrik Moos, Gerardo Moreno, Alejandro Morón-Ríos, Hasegawa Motohiro, Bart Muys, Johan Neirynck, Lindsey Norgrove, Marta Novo, Visa Nuutinen, Victoria Nuzzo, P Mujeeb Rahman, Johan Pansu, Shishir Paudel, Guénola Pérès, Lorenzo Pérez-Camacho, Jean-François Ponge, Jörg Prietzel, Irina B Rapoport, Muhammad Imtiaz Rashid, Salvador Rebollo, Miguel Á Rodríguez, Alexander M Roth, Guillaume X Rousseau, Anna Rozen, Ehsan Sayad, Loes van Schaik, Bryant Scharenbroch, Michael Schirrmann, Olaf Schmidt, Boris Schröder, Julia Seeber, Maxim P Shashkov, Jaswinder Singh, Sandy M Smith, Michael Steinwandter, Katalin Szlavecz, José Antonio Talavera, Dolores Trigo, Jiro Tsukamoto, Sheila Uribe-López, Anne W de Valença, Iñigo Virto, Adrian A Wackett, Matthew W Warren, Emily R Webster, Global data on earthworm abundance, biomass, diversity and corresponding environmental properties, Scientific Data, 8, 10.1038/s41597-021-00912-z
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Scientific DataEERIDCFE
​Kleber, M., Bourg, I.C., Coward, E.K., Hansel, C.M., Myneni, S.C.B., Nunan, N*., 2021. Dynamic interactions at the mineral–organic matter interface. Nature Reviews Earth & Environment. 10.1038/s43017-021-00162-y
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Nature Reviews Earth & EnvironmentBioDISDCFE
​Mathias Koffi Ahoutou, Rosine Yao Djeha, Eric Kouamé Yao, Catherine Quiblier, Julie Niamen-Ebrottié, Sahima Hamlaoui, Kevin Tambosco^, Jean-Louis Perrin, Marc Troussellier, Cécile Bernard, Luc Seguis, Marc Bouvy, Jacques Pédron*, Felix Koffi Konan, Jean-François Humbert*, Julien Kalpy Coulibaly (2021) Assessment of some key indicators of the ecological status of an African freshwater lagoon (Lagoon Aghien, Ivory Coast). Plos One, 10.1371/journal.pone.0251065
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PLoS ONECoMiCDCFE
​Jacob J., Bossard N., Bariac T.*, Terwilliger V., Biron P.*, Richard P., Le Milbeau C., Vergès E., 2021 : Hydrogen isotopic fractionations during syntheses of lipid biomarkers in the seeds of broomcorn millet (Panicum miliaceum L.) under controlled environmental conditions, Organic Geochemistry,154,104221.10.1016/j.orggeochem.2021.104221
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Organic GeochemistryEMSDCFE
​Yé, L.~’, J.-C. Lata*, H. B. Nacro’, D. Masse, and S. Barot*. 2021. Effects of livestock on nitrogen and carbon cycling in a savanna in Burkina Faso. Acta Oecologica 110: 10369410.1016/j.actao.2020.103694
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Acta OecologicaEMSDCFE
Cantarel, A. A. M., V. Allard, B. Andrieu, S. Barot*, J. Enjalbert, J. Gervaix, I. Goldringer, T. Pommier, S. Saint Jean, and X. Le Roux. 2021. Plant functional trait variability and trait syndromes among wheat (Triticum aestivum) varieties: the footprint of artificial selection. Journal of Experimental Botany 62: 1166–1180.10.1093/jxb/eraa491
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Journal of Experimental BotanyEMSDCFE
Quévreux, P.~, S. Barot*, and S. Thébault*. 2021. Interplay between the paradox of enrichment and nutrient cycling in food webs. Oikos 130:95–109.10.1111/oik.07937
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OikosEMSDCFE ; EERIDCFE
​​Wigley B. J., Charles-Dominique T.*, Hempson G. P., Stevens N., TeBeest M., Archibald S., Bond W. J., Bunney K., Coetsee C., Donaldson J., Fidelis A., Gao X., Gignoux J.*, Lehmann C., Massad T. J., Midgley J. J., Millan M., Schwilk D., Siebert F., Solofondranohatra C., Staver A. C., Zhou Y., Kruger L. M. (2020) Corrigendum to: A handbook for the standardised sampling of plant functional traits in disturbance-prone ecosystems, with a focus on open ecosystems. Australian Journal of Botany, 69: 110-11010.1071/BT20048_COAustralian Journal of BotanyEMSDCFE
Noémie Pascault, Olivier Rué, Valentin Loux, Jacques Pédron*, Véronique Martin, Jennifer Tambosco, Cécile Bernard, Jean‐François Humbert*, Julie Leloup* (2021) Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions? Env. Mic. Reports. 10.1111/1758-2229.12944
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Environmental Microbiology ReportsCoMiCDCFE ; EMSDCFE
​Michelet C., Zeppilli, D., Hubas, C., Baldrighi, E., Cuny, P., Dirberg, G., Militon, C., Lamy, D.*, Jézéquel, R., Receveur, J., Gilbert, F., El Houssainy, A., Dufour, A., Heimbürger-Boavida, L-E., Bihannic, I., Sylvi, L., Vivier, B., Michaud, E. (2021) First assessment of the benthic meiofauna sensitivity to low human-impacted mangroves in french Guiana. Forests, 12:33810.3390/f12030338
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ForestsCoMiCDCFE
Fourcade Y.*, WallisDeVries M.F., Kuussaari M., Van Swaay C.A.M., Heliölä J., Öckinger E. (2021) Habitat amount and distribution modify community dynamics under climate change. Ecology Letters, 24, 950-95710.1111/ele.13691
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Ecology LettersBioDISDCFE
Picot A~, Monnin T, Loeuille N (2021) Implications of the evolution of agriculture and resource foraging for the maintenance of species diversity and community structure. bioRxiv 10.1101/2021.03.02.433551BioRxivESEAEEcoEvo ; EERIDCFE
Duchenne F.~, Martin G., Porcher E. (2021) European plants lagging behind climate change pay a climatic debt in the North, but are favoured in the South. Ecology Letters, 24: 1178-118610.1111/ele.13730​
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Ecology LettersEERIDCFE
​Van Sundert, K., Arfin Khan, M.A.S., Bharath, S., Buckley, Y.M., Caldeira, M.C., Donohue, I., Dubbert, M., Ebeling, A., Eisenhauer, N., Eskelinen, A., Finn, A., Gebauer, T., Haide, S., Hansart, A., Jentsch, A., Kübert, A., Nijs, I., Nock, C.A., Nogueira, C., Porath-Krause, A.J., Radujković, D., Raynaud, X.*, Risch, A.C., Roscher, C., Scherer-Lorenzen, M., Schuchardt, M.A., Schütz, M., Siebert, J., Sitters, J., Spohn, M., Virtanen, R., Werner, C., Wilfahrt, P., & Vicca, S. 2021. Fertilized graminoids intensify negative drought effects on grassland productivity. Global Change Biology.10.1111/gcb.15583
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Global Change BiologyEMSDCFE
​Doré M.°, Fontaine C., Thébault E.* (2021) Relative effects of anthropogenic pressures, climate, and sampling design on the structure of pollination networks at the global scale. Global Change Biology, 27:1266-128010.1111/gcb.15474
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Global Change BiologyEERIDCFE
Laurie Boithias, Yves Auda, Stéphane Audry, Jean-Pierre Bricquet, Alounsavath Chanhphengxay`, Vincent Chaplot,  Anneke de Rouw*, Thierry Henry des Tureaux*, Sylvain Huon*, Jean-Louis Janeau*, Keooudone Latsachack`, Yann Le Troquer*, Guillaume Lestrelin, Jean-Luc Maeght, Pierre Marchand, Pierre Moreau, Andrew Noble, Anne Pando-Bahuon*, Kongkeo Phachomphon`, Khambai Phanthavong`, Alain Pierret*, Olivier Ribolzi, Jean Riotte, Henri Robain*, Emma Rochelle-Newall*, Saysongkham Sayavong`, Oloth Sengtaheuanghoung`, Norbert Silvera*, Nivong Sipaseuth`, Bounsamay Soulileuth`, Xaysatith Souliyavongsa`, Phapvilay Sounyaphong`, Sengkeo Tasaketh`, Chanthamousone Thammahacksa`, Jean-Pierre Thiebaux, Christian Valentin*, Olga Vigiak, Marion Viguier^, Khampaseuth Xayyathip`.(2021) The Multiscale TROPIcal CatchmentS critical zone observatory M-TROPICS dataset II: Land use, hydrology and sediment production monitoring in Houay Pano, northern Lao PDR. Hydrological Processes. 2021;35:e14126.10.1002/hyp.14126
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Hydrological ProcessesBioDISDCFE ; CoMiCDCFE ; FESTSols_ZC ; F2ZCSols_ZC
​Mügler, C., O. Ribolzi, M. Viguier, J.-L. Janeau*, E. Jardé, K. Latsachack`, T. Henry-Des-Tureaux*, C. Thammahacksa`, C. Valentin*, O. Sengtaheuanghoung` and E. Rochelle-Newall* (2021). “Experimental and modelling evidence of splash effects on manure borne Escherichia coli washoff.” Environmental Science and Pollution Research: 1-12.10.1007/s11356-021-13011-8
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Environmental Science and Pollution ResearchCoMiCDCFE ; FESTSols_ZC ; F2ZCSols_ZC
​David, G. M., P. López-García, D. Moreira, B. Alric, P. Deschamps, P. Bertolino, G. Restoux, E. Rochelle-Newall, E. Thébault, M. Simon and L. Jardillier “Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns.” Molecular Ecology 10.1111/mec.15864Molecular EcologyCoMiCDCFE ; EERIDCFE
Maggia M.-E., Decaëns T., Lapied E., Dupont L.*, Roy V.*, Schimann H., Orivel J., Murienne J., Baraloto C., Cottenie K., Steinke D. At each site its diversity: DNA barcoding reveals remarkable earthworm diversity in neotropical rainforests of French Guiana. Applied Soil Ecology, 164 : 10393210.1016/j.apsoil.2021.103932Applied Soil EcologyBioDISDCFE
Zaninotto V.~, Perrard A.*, Babiar O., Hansart A., Hignard C., Dajoz, I.* (2021) Seasonal Variations of Pollinator Assemblages among Urban and Rural Habitats: A Comparative Approach Using a Standardized Plant Community. Insects, 12, 19910.3390/insects12030199
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InsectsEERIDCFE
​Anest A., Charles‐Dominique T.*, Maurin O., Millan M.,  Edelin C., Tomlinson K.W. (2021) Evolving the structure: Climatic and developmental constraints on the evolution of plant architecture. A case study in Euphorbia. New Phytologist10.1111/nph.17296
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New PhytologistEMSDCFE
​Kheir M., Lerch T.Z.*, Borsali A.H., Roche P., Ziarelli F., Zouidi M., Farnet Da Silva A.M. (2021) Litter microbial responses to climate change: how do inland or coastal context and litter type matter across the Mediterranean? Ecological Indicators 125: 10750510.1016/j.ecolind.2021.107505Ecological IndicatorsBioDISDCFE
​Nakhle P., Ribolzi O., Boithias L., Rattanavong S., Auda Y., Sayavong S., Zimmermann R., Soulileuth B., Pando A*., Thammahacksa C., Rochelle-Newall E.J.*, Santini W., Martinez J-M., Gratiot N., Pierret A*.(2021) “Effects of hydrological regime and land use on in-stream Escherichia coli concentration in the Mekong basin, Lao PDR”. Scientific Reports, 11:3460.10.1038/s41590-021-82891-0Scientific ReportsBioDISDCFE ; CoMiCDCFE
​Rome Q., Perrard A., Muller F., Fontaine C., Quilès A., Zuccon D. & Villemant C. 2021. Not just honeybees: predatory habits of Vespa velutina (Hymenoptera:Vespidae) in France. Annales de la Société Entomologique de France. (N.S).10.1080/00379271.2020.1867005
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Annales de la Societe Entomologique de FranceEERIDCFE
​Sisouvanh P’, Trelo-Ges V’., Isarangkool Na Ayutthaya S’., Pierret A.*, Nunan N*., Silvera N.*, Xayyathip K’., Hartmann C*. (2021) Can organic amendments improve soil physical characteristics and increase maize performances in contrasting soil water regimes? Agriculture, 11, 132.10.3390/agriculture11020132AgricultureCoMiCDCFE ; BioDISDCFE ; F2ZCSols_ZC
Konaré S~, Boudsocq S, Gignoux J*, Lata J-C*, Raynaud X*, Barot S*. 2021. Spatial heterogeneity in nitrification and soil exploration by trees favour source-sink dynamics in a humid savanna: a modeling approach. Functional Ecology 202110.1111/1365-2435.13762
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Functional EcologyEMSDCFE
Akpoué, J.-P.~, Barot, S.*, Raynaud, X.*, Gignoux, J.*, 2021. Biomass allocation of tree resprout in a fire-prone savanna. Ecological Modelling 448, 10952710.1016/j.ecolmodel.2021.109527
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Ecological ModellingEMSDCFE
​David F., Meziane T., Marchand C., Rolland G., Pham A., Thanh-Nho N., Lamy, D.* (2021) Prokaryotic abundance, cell size and extracellular enzymatic acrivity in a human impacted and mangrove dominated tropical estuary (Can Gio, Vietnam). Estuarine, Coastal and Shelf Science, 251: 10725310.1016/j.ecss.2021.107253
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Estuarine, Coastal and shelf ScienceCoMiCDCFE
Nakhle P., Ribolzi O., Boithias L., Rattanavong S.’, Auda Y., Sayavong S.’, Zimmermann R.E., Soulileuth B.’, Pando A*., Tammahacksa C’., Rochelle-Newall E.*, Santinin W., Martinez J.-M., Gratiot N., Pierret A.* (2021) Effects of hydrological regime and land use on in-stream Escherichia coli concentration in the Mekong basin, Lao PDR, Scientific Reports – Nature 11:3460 10.1038/s41598-021-82891-0​Scientific ReportsCoMiCDCFE ; BioDISDCFE
​Shi A, Chakrawal A, Manzoni S, Fischer BMC, Nunan N*, Herrmann AH (2021) Substrate spatial heterogeneity reduces soil microbial activity. Soil Biology & Biochemistry, 152, 10806810.1016/j.soilbio.2020.108068
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Soil Biology and BiochemistryBioDISDCFE
Pham T.`°, Rumpel C.*, Capowiez Y., Jouquet P.*, Pelosi C., Pando A.*, Aroui Boukdiba H.*, Bottinelli N.*. (2021). Mid-infraned spectroscopy of earthworm bodies to investigate their species belonging and their relationship with the soil they inhabit. Applied Soil Ecology 162.10.1016/j.apsoil.2021.103894
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Applied Soil EcologyBioDISDCFE ; FESTSols_ZC
Guttières R~, Nunan N*, Raynaud X*, Lacroix G*, Barot S*, Barré P, Girardin C, Guenet B, Lata J-C*, Abbadie L*. 2021. Temperature and soil management effects on carbon fluxes and priming effect intensity. Soil Biology and Biochemistry 153: 10810310.1016/j.soilbio.2020.108103
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Soil Biology and BiochemistryEMSDCFE ; BioDISDCFE
​Boithias, L., O. Ribolzi, G. Lacombe, C. Thammahacksa*, N. Silvera*, K. Latsachack*, B. Soulileuth*, M. Viguier, Y. Auda, E. Robert, O. Evrard, S. Huon*, T. Pommier, C. Zouiten, O. Sengtaheuanghoung` and E. Rochelle-Newall* (2021). “Quantifying the effect of overland flow on Escherichia coli pulses during floods: Use of a tracer-based approach in an erosion-prone tropical catchment.” Journal of Hydrology 594: 125935. 10.1016/j.jhydrol.2020.125935
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Journal of HydrologyCoMiCDCFE ; F2ZCSols_ZC
 Liechti N., Zimmermann R.E., Zopfi J., Robinson M., Pierret A*, Ribolzi O., Rattanavong S’., Davong V.’, Newton P.N., Wittwer M., Dance D.A.B. (2021) Whole-genome assemblies of 16 Burkholderia pseudomallei isolates from rivers in Laos. Microbiol Resour Announc 10:e01226-20,10.1128/MRA.01226-20​
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Microbiology Resources AnnouncementsCoMiCDCFE
Yacine Y. ~, Allhoff K.T.`, Weinbach A.~& Loeuille N.* (2020). Collapse and rescue of evolutionary food webs under global warming. J. Anim. Ecol., 2021;00:1–13.10.1111/1365-2656.13405Journal of Animal EcologyEERIDCFE
Abbadie L.* 2020. Le monde vivant ne peut être que changeant et hétérogène. In : Solutions des entreprises pour la biodiversité : d’échelle. Entreprises pour l’environnement, Paris, p 46changerEntreprises pour l’environnementEMSDCFE
​Wigley B. J., Charles-Dominique T.*, Hempson G. P., Stevens N., TeBeest M., Archibald S., Bond W. J., Bunney K., Coetsee C., Donaldson J., Fidelis A., Gao X., Gignoux J.*, Lehmann C., Massad T. J., Midgley J. J., Millan M., Schwilk D., Siebert F., Solofondranohatra C., Staver A. C., Zhou Y., Kruger L. M. (2020) A handbook for the standardised sampling of plant functional traits in disturbance-prone ecosystems, with a focus on open ecosystems. Australian Journal of Botany10.1071/BT20048
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Australian Journal of BotanyEMSDCFE
​Anh, H. Q., T. P. Q. Le`, N. Da Le, X. X. Lu, T. T. Duong`< /span>, J.Garnier, E. Rochelle-Newall*, S. Zhang, N.-H. Oh, C. Oeurng`, C. Ekkawatpanit, T. D. Nguyen, Q. T. Nguyen, T. D. Nguyen, T. N. Nguyen, T. L. Tran, T. Kunisue, R. Tanoue, S. Takahashi, T. B. Minh, H. T. Le, T. N. M. Pham and T. A. H. Nguyen (2020). “Antibiotics in surface water of East and Southeast Asian countries: A focused review on contamination status, pollution sources, potential risks, and future perspectives.” Science of The Total Environment: 14286510.1016/j.scitotenv.2020.142865Science of the Total EnvironmentCoMiCDCFE
Duchenne F.~, Thébault E.*, Michez D., Gérard M., Devaux C., Rasmont P., Vereecken N.J., Fontaine C. (2020) Long-term effects of global change on occupancy and flight period of wild bees in Belgium. Global Change Biology, 26: 6753– 676610.1111/gcb.15379
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Global Change BiologyEERIDCFE
Alhajeri B., Fourcade Y.*, Upham N. S., Alhaddad H. (2020) A global test of Allen’s rule in Rodents. Global Ecology & Biogeography​​, 29: 2248-2260
10.1111/geb.13198Global Ecology & Biogeography​BioDISDCFE
Portier P., Pédron J.*, Taghouti G., Dutrieux C., Barny MA.* (2020) Updated taxonomy of Pectobacterium genus in the CIRM-CFBP bacterial collection: when newly described species reveal “old” endemic population. Microorganism 8 :144110.3390/microorganisms8091441
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MicroorganismsCoMiCDCFE
​Maliet, O., Loeuille, N*., Morlon, H (2020) An individual based model for the eco-evolutionary emergence of bipartite interaction networks. Ecology Letters, 10.1111/ele.13592
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Ecology LettersEERIDCFE
Ottaviani, G., Molina-Venegas, R., Charles-Dominique, T., Chelli, S., Campetella, G., Canullo, R., & Klimešová, J. (2020). The neglected belowground dimension of plant dominance. Trends in ecology & evolution, 35 (9), 763-766.10.1016/j.tree.2020.06.006
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Trends in Ecology and EvolutionEMSDCFE
Couvreur V., Rothfuss Y., Meunier F., Bariac T.,* Biron P.*, Durand J.-L., Richard P.*, Javaux M. (2020): Disentangling temporal and population variability in plant root water uptake from stable isotopic analysis: a labeling study. Hydrology and Earth System Sciences, European Geosciences Union10.5194/hess-2019-543Hydrology and Earth System Sciences, European Geosciences UnionEMSDCFE
Foti L~, Barot S*, Gignoux J*, Grimaldi M*, Lata J-C*, Lerch T.Z.*, Nold F, Nunan N*, Raynaud X*, Abbadie L*, Dubs F* 2020. Topsoil characteristics of forests and lawns along an urban-rural gradient in the Paris region. Soil Use and Management: 1-13 10.1111/sum.12640
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Soil Use and ManagementEMSDCFE ; BioDISDCFE ; FESTSols_ZC
​Frerejacques M., Rousselle C., Gauthier L., Cottet-Emard S., Derobert L., Roynette A., Lerch T.Z.*, Changey F. (2020) Human skin bacterial community response to probiotic (Lactobacillus reuteri DSM 17938) introduction. Microorganisms 8, 122310.3390/microorganisms8081223
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MicroorganismsBioDISDCFE
​Song, L.’, Boithias, L., Sengtaheuanghoung, O.’, Oeurng C.’, Valentin C*., Souksavath B’., Sounyafong P.’, De Rouw A*., Soulileuth B.’, Silvera N.*, Lattanavongkhot B.’, Pierret A*., Ribolzi O. (2020) Understorey vegetation limits surface runoff and soil loss in teak plantation-based systems of Northern Lao PDR. Water10.3390/w12092327WaterCoMiCDCFE ; F2ZCSols_ZC
El Hayany B., El Fels L., Quenea K., Dignac M.-F.*, Rumpel C.*, Gupta V.K., Hafidi M. 2020. Microplastics from lagooning sludge to composts as revealed by Fluorescent staining- Image analysis, Raman spectroscopy and Pyrolysis-GC/MS. Journal of Environmental Management 275 111249.10.1016/j.jenvman.2020.111249​
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Journal of Environmental ManagementCoMiCDCFE ; FESTSols_ZC
Widhalm T., Fourcade Y.*, Frank T., Öckinger, E. (2020) Population dynamics of the butterfly Pyrgus armoricanus after translocation beyond its northern range margin. Insect Conservation and Diversity, 13: 617-629
10.1111/icad.12430Insect Conservation and DiversityBioDISDCFE
Flacher F~, Raynaud X*, Hansart A, Geslin B, Motard E*, Verstraet S°, Bataille M°, Dajoz I*. 2020. Below-ground competition alters attractiveness of an insect-pollinated plant to pollinators. AoB PLANTS 12: plaa022.10.1093/aobpla/plaa022
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AoB PlantsEMSDCFE ; EERIDCFE
Pédron J.*, Guyon L., Lecomte A.°, Blottière L.^, Chandeysson C., Rochelle-Newall E.*, Raynaud X.*, Berge O., Barny MA*. (2020) Comparison of Environmental and Culture-Derived Bacterial Communities through 16S Metabarcoding: A Powerful Tool to Assess Media Selectivity and Detect Rare Taxa. Microorganisms 27:E112910.3390/microorganisms8081129
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MicroorganismsCoMiCDCFE ; EMSDCFE
​Borsali A.H., Lerch T.Z.*, Besbes R., Gros R., Laffont-Schwob I., Boudenne J.L., Ziarelli F., Pando A.*, Farnet Da Silva A.M. (2021)  Coastal environments shape chemical and microbial properties of forest litters in circum Mediterranean region assessment. European Journal of Soil 72: 1010-102510.1111/ejss.13023
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European Journal of Soil ScienceBioDISDCFE
Changey F^., Blaud A., Pando A*., Herrmann A., Lerch T.Z.*. (2020). Monitoring soil microbial communities using molecular tools: DNA extraction methods may offset long-term management effects. European Journal of Soil Science 72: 1026-104110.1111/ejss.13026
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European Journal of Soil ScienceBioDISDCFE
​El Hayany B., El Fels L., Dignac M.-F.*, Quenea K., Rumpel C.*, Hafidi M. (2020) Pyrolysis-GCMS as a tool for maturity evaluation of compost from sewage sludge and green waste. Waste and biomass Valorization.10.1007/s12649-020-01184-1
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Waste and Biomass ValorizationCoMiCDCFE ; FESTSols_ZC
Panettieri M., Courtier-Murias D., Rumpel C.,* Dignac M.-F.*, Almendros G., Chabbi A. 2020. Land-use perturbations in ley grassland decouple the degradation of ancient soil organic matter from the storage of newly derived carbon inputs. SOIL Discussions, 1-31.10.5194/soil-2020-16​
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SOIL DiscussionsCoMiCDCFE ; FESTSols_ZC
​Davies, T. J., Daru, B. H., Bezeng, B. S., Charles-Dominique, T., Hempson, G. P., Kabongo, R. M., Maurin, O., Muasya, A.M., van der Bank, M.,  Bond, W. J. (2020). Savanna tree evolutionary ages inform the reconstruction of the paleoenvironment of our hominin ancestors. Scientific reports, 10(1), 1-8.10.1038/s41598-020-69378-0
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Scientific ReportsEMSDCFE
​Lehmann, J., Hansel, C.M., Kaiser, C., Kleber, M., Maher, K., Manzoni, S., Nunan, N., Reichstein, M., Schimel, J.P., Torn, M.S., Wieder, W.R., Kögel-Knabner, I., 2020. Persistence of soil organic carbon caused by functional complexity. Nat. Geosci. 13, 529–534.10.1038/s41561-020-0612-3
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Nature GeoscienceBioDISDCFE
Fourcade Y.*, Richardson D.S., Secondi J. (2020) No evidence for a loss of genetic diversity despite a strong decline in size of a European population of the corncrake Crex crex. Bird Conservation International, 30: 260-266


10.1017/S0959270919000327Bird Conservation InternationalBioDISDCFE
Zaninotto V~, Raynaud X*, Gendreau E*, Kraepiel Y*, Motard E*, Babiar O, Hansart A, Hignard C, Dajoz I*. 2020. Broader phenology of pollinator activity and higher plant reproductive success in an urban habitat compared to a rural one. Ecology and Evolution: 10: 11607– 11621.10.1002/ece3.6794
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Ecology and EvolutionEERIDCFE ; EMSDCFE
​Arrieta-Escobar J., Derrien D., Ouvrard S., Asadollahi-Yazdi E., Hassan A., Boly V., Tinet A.-J., Dignac M.-F.* 2020. 3D Printing: an emerging opportunity for soil science. Geoderma. 378 114588.10.1016/j.geoderma.2020.114588
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GeodermaCoMiCDCFE
Le Mer G.~, Barthod J.~, Dignac M.-F.,* Barré P., Baudin F., Rumpel C.* 2020. Inferring earthworms’ impact on the stability of organo-mineral associations by Rock-Eval pyrolysis and 13C NMR spectroscopy. Organic Geochemistry, 104016.10.1016/j.orggeochem.2020.104016
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Organic GeochemistryCoMiCDCFE ; FESTSols_ZC
Célini L.*, Roy V.*, Delabie J., Frechault S.*, Mora P.* (2020). Présence de Solenopsis globularia (F. Smith, 1858) et Cardiocondyla emeryi Forel, 1881 (Formicidae : Myrmicinae) dans l’île de Saint Barthélemy aux Antilles Françaises. Bulletin de la Société Entomologique de France, 125 (2) : 145 162.​10.32475/bsef_2061Bulletin de la Société Entomologique de FranceBioDISDCFE ; ESEAEEcoEvo
Olivier T., Thébault E.*, Elias M., Fontaine B., Fontaine C. (2020) Urbanization and agricultural intensification destabilize animal communities differently than diversity loss. Nature Communications, 11: 2686.10.1038/s41467-020-16240-6
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Nature CommunicationsEERIDCFE
Nunan N, Schmidt H, Raynaud X. 2020. The ecology of heterogeneity: soil bacterial communities and C dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences 375: 20190249.10.1098/rstb.2019.0249
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Philosophical Transactions of the Royal Society B: Biological SciencesEMSDCFE ; BioDISDCFE
Pruvost C.~
, Mathieu J.*, Nunan N.,* Gigon A.*, Pando A.*, Lerch T.Z.*, Blouin M. 2020.Tree growth and macrofauna colonization in Technosols constructed from recycled urban wastes. Ecological Engineering, 153, 105886​
10.1016/j.ecoleng.2020.105886
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Ecological EngineeringBioDISDCFE ; EERIDCFE
Vidal A., Lenhart T., Dignac M.F*, Biron P.*, Höschen C., Barthod J., Vedere C., Vaury V.*, Bariac T.*, Rumpel C.* (2020): Promoting plant growth and carbon transfer to soil with with organic amendments produced with mineral additives. Geoderma.Volume 374, 1 September 2020, 11445410.1016/j.geoderma.2020.114454
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GeodermaEMSDCFE ; CoMiCDCFE ; FESTSols_ZC ; F2ZCSols_ZC
Carraro L., Bertuzzo E., Fronhofer E. A., Gounand I.*, Rinaldo A., and Altermatt A. (2020) Generation and application of river network analogues for use in ecology and evolution. Ecology and Evolution 10(14): 7537-755010.1002/ece3.6479
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Ecology and EvolutionEERIDCFE
Dusza Y.~, Kraepiel Y.*, Abbadie L.*, Barot S.*, Carmignac D.*, Dajoz I.*, Gendreau E.*, Lata J.C.*, Mériguet J., Motard E.* and Raynaud X.* (2020) Plant-pollinator interactions on green roofs are mediated by substrate characteristics and plant community composition. Acta Oecologica, 10510.1016/j.actao.2020.103559
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Acta OecologicaEMSDCFE ; EERIDCFE
​Taheri S.~, Decaëns T., Cunha L., Brown G.G., Da Silva E., Bartz M.L.C., Baretta D., Dupont L.* (2020) Genetic evidence of multiple introductions and mixed reproductive strategy in the peregrine earthworm Pontoscolex corethrurus. Biological Invasions, 22 : 2545-255710.1007/s10530-020-02270-0
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Biological InvasionsBioDISDCFE
Jacquet J., Gounand I.*, Altermatt F. (2020) How pulse disturbances shape size-abundance pyramids. Ecology Letters. Early view​10.1111/ele.13508
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Ecology LettersEERIDCFE
Gounand I.*, Little, C.J.​, Harvey E., Altermatt F. (2020) Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types. Global Ecology and Biogeography, Early view
 

10.1111/geb.13093
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Global Ecology & Biogeography​EERIDCFE
​Deckmyn, G., O. Flores, M. Mayer, X. Domene, A. Schnepf, K. Kuka, K. Van Looy, D. P. Rasse, M. J. I. Briones, S. Barot*, M. Berg, E. Vanguelova, I. Ostonen, H. Vereecken, L. M. Suz, B. Frey, A. Frossard, A. Tiunov, J. Frouz, T. Grebenc, M. Öpik, M. Javaux, A. Uvarov, O. Vindušková, P. Henning Krogh, O. Franklin, J. Jiménez, and J. Curiel Yuste. 2020. KEYLINK: t owards a more integrative soil representation for inclusion in ecosystem scale models. I. review and model concept. PeerJ 8.10.7717/peerj.9750Peer JEMSDCFE
Guerra C, Rosa I, Valentini E., Wolf F., Filiponi F., Karger D.N., Xuan A, Mathieu J.*, Lavelle P., Eisenhauer N. (2020) Global vulnerability of soil ecosystems to erosion. Landscape Ecology, 35, 823–84210.1007/s10980-020-00984-z
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Landscape EcologyEERIDCFE
​Nicolai A., Guernion M., Guillocheau S., Hoeffner K., Le Gouar P., Ménard N., Piscart C., Vallet D., Hervé M.E.T.T., Benezeth E., Chedanne H., Blémus J., Vernon P., Cylly D., Hotte H., Loïs G., Mai B., Perez G., Ouisse T., Monard C., Wiegand C., Caudal J.-P.P., Butet A., Dahirel M., Barbe L., Balbi M., Briand V., Bormans M., Charrier M., Bouger G., Jung V., Le Lann C., Pannard A., Petillon J., Rantier Y., Marguerie D., Tougeron K., Devogel P., Dugravot S., Dubos T., Garrin M., Carnet M., Gouraud C., Chambet A., Esnault J., Poupelin M., Welk E., Bütof A., Dubois G.F., Humbert G.^, Marie-Réau O., Norvez O., Richard G., Froger B., Rochais C., Potthoff M., Ayati K., Bellido A., Rissel A., Santonja M., Farcy J.-O.O., Collias E., Sene L., Cluzeau D., Supper R., 2020. Transdisciplinary bioblitz: Rapid biotic and abiotic inventory allows studying environmental changes over 60 years at the Biological Field Station of Paimpont (Brittany, France) and opens new interdisciplinary research opportunities. Biodivers. Data J. 8, e50451. https://doi.org/10.3897/BDJ.8.E5045110.3897/BDJ.8.E50451
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Biodiversity Data JournalEMSDCFE
Harvey E., Gounand I.*, Fronhofer E.A., and Altermatt F. (2020) Metaecosystem dynamics drive community composition in experimental multi-layered spatial networks. Oikos 129: 402-412,10.1111/oik.07037
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OikosEERIDCFE
Chakrawal, A., Herrmann, A.M., Koestel, J., Jarsjö, J., Nunan, N., Kätterer, T., Manzoni, S., 2020. Dynamic upscaling of decomposition kinetics for carbon cycling models. Geoscientific Model Development 13, 1399–1429.10.5194/gmd-13-1399-2020
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Geoscientific Model DevelopmentBioDISDCFE
Baudrin G.°, Roy V.*, Gigon A.*, Dupont L.* (2020) Bar-HRM for identification of cryptic earthworm species. Pedobiologia – Journal of Soil Ecology, 80: 15063410.1016/j.pedobi.2020.150634Journal of Soil EcologyBioDISDCFE
Rankovic A., Geslinc B., Perrarda A., Barbillon A., Vaury V., Abbadie L.*,  Dajoz I*.(2020). Urbanization effects on wild bee carbon and nitrogen stable isotope ratios in the Paris region. Acta Oecologica, Volume 105.10.1016/j.actao.2020.103545
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Acta OecologicaF2ZCSols_ZC ; EERIDCFE
​Klimešová, J., Martínková, J., Ottaviani, G., & Charles-Dominique, T.* (2020). Half of the (big) picture is missing!. American Journal of Botany, 107(3), 385-389.10.1002/ajb2.1438
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American Journal of BotanyEMSDCFE
Sayavong, S’., Kaewjampa, N’., Katawatin, R’., Boonthai Iwai C’., Moukomla S.’, Oszwald J., Pierret A*. (2020) Recent Co-occurring Expansion of Rubber Tree Plantations and Land Use/Land Cover Change in Luangnamtha District, Northern Laos. International Journal of Geoinformatics, 16(1), 85-10110.52939/ijg.v16i11843International Journal of GeoinformaticsCoMiCDCFE
Vincent, F.~, Bertolo A., Lacroix G.*, Mouchet M., Edeline E. (2020) Trait-dependency of trophic interactions in zooplankton food webs. Oikos, 129: 891-90210.1111/oik.06783
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OikosEERIDCFE
​Humbert G.^, Sébilo M.*, Fiat J., Lang L., Filali A., Vaury V.*, Spérandio M., Laverman A.M., 2020. Isotopic evidence for alteration of nitrous oxide emissions and producing pathways’ contribution under nitrifying conditions. Biogeosciences 17, 979–993. https://doi.org/10.5194/bg-17-979-202010.5194/bg-17-979-2020
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BiogeosciencesEMSDCFE
Audusseau H.^, Vandenbulcke F., Dume C.°, Deschins V.°, Pauwels M., Gigon A.*, Bagard M.*, Dupont L.* (2020) Impacts of metallic trace elements on an earthworm community in an urban wasteland: Emphasis on the bioaccumulation and genetic characteristics in Lumbricus castaneus. Science of the Total Environnement, 718 : 13725910.1016/j.scitotenv.2020.137259
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Science of the Total EnvironmentBioDISDCFE ; APCEIPE
Armani M.,  Goodale U.M., Charles–Dominique T.*, Barton K.E., Yao X., Tomlinson K.W. (2016) Structural defence is coupled with the leaf economic spectrum across saplings of spiny species. Oikos10.1111/oik.06960
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OikosEMSDCFE
Barthod J.~, Dignac M.-F.*, Le Mer G.~, Bottinelli N.*, Watteau F., Kögel-Knabner I., Rumpel C.* (2020) How do earthworms affect organic matter decomposition in the presence of clay-sized minerals? Soil Biology and Biochemistry
10.1016/j.soilbio.2020.107730
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Soil Biology and BiochemistryCoMiCDCFE ; FESTSols_ZC
Anderson PML, Charles-Dominique T*, Ernstson H, Andersson E, Elmqvist T. (2020) Post-apartheid ecologies in the City of Cape Town: an examination of plant functional traits in relation to urban gradients. The case of the city of Cape Town. Landscape and Urban Planning 193: 10366210.1016/j.landurbplan.2019.103662
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Landscape and Urban PlanningEMSDCFE
​Brunel C., Gros R., Lerch T.Z.*, Farnet Da Silva A.M. (2020) Changes in soil organic matter and microbial communities after fine and coarse residues inputs from Mediterranean tree species. Applied Soil Ecology 149: 10351610.1016/j.apsoil.2020.103516
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Applied Soil EcologyBioDISDCFE
​Thorup-Kistensen K., Halberg N., Nicolaisen M., Eivind-Olsen J., Crews T.E., Hinsinger P., Kirkegaard J. Pierret A*., Bodin-Dresbøll D (2020) Digging Deeper for Agricultural Resources, the Value of Deep Rooting.Trends in Plant Science.10.1016/j.tplants.2019.12.007
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Trends in Plant ScienceCoMiCDCFE
Duchenne F.~, Thébault E.*, Michez D., Elias M., Drake M., Persson M., Piot J.S., Pollet M., Vanormelingen P., Fontaine C. (2020) Phenological shifts alter the seasonal structure of pollinator assemblages in Europe. Nature Ecology and Evolution, 4: 115-12110.1038/s41559-019-1062-4
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Nature Ecology and EvolutionEERIDCFE
​Romanuk, T. N., Binzer, A., Loeuille, N.*, Carscallen, W. M. A., Martinez, N. (2019) Simulated evolution assembles more realistic food webs with more functionally similar species than invasion. Scientific Reports, 9:1824210.1038/s41598-019-54443-0
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Scientific ReportsEERIDCFE
Humbert G.^, Parr T.B., Jeanneau L., Dupas R., Petitjean P., Akkal-Corfini N., Viaud V., Pierson-Wickmann A.-C., Denis M., Inamdar S., Gruau G., Durand P., Jaffrézic A. (2019) Agricultural practices and hydrologic conditions shape the temporal pattern of soil and stream water dissolved organic matter. Ecosystems, 1–1910.1007/s10021-019-00471-w
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EcosystemsEMSDCFE
Paradelo R., Lerch T.Z.*, Houot S., Dignac M.-F.* (2019) Composting modifies the patterns of incorporation of OC and N from plant residues into soil aggregates. Geoderma, 353: 415-422. 10.1016/j.geoderma.2019.07.025
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GeodermaCoMiCDCFE ; BioDISDCFE
​Tissot, T.^, Massol, F., Ujvari, B., Alix-Panabieres C., Loeuille, N.*, Thomas, F. (2019) Metastasis and the evolution of dispersal. Proceedings of the Royal Society, B., 286: 20192186
10.1098/rspb.2019.2186
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Proceedings of the Royal Society BEERIDCFE
Madhav P. Thakur, Helen R. P. Phillips, Ulrich Brose, Franciska T. De Vries,Patrick Lavelle, Michel Loreau, Jerome Mathieu*, Christian Mulder, Wim H. Van der Putten, Matthias C. Rillig, David A. Wardle, Elizabeth M. Bach,Marie L. C. Bartz, Joanne M. Bennett, Maria J. I. Briones, George Brown, Thibaud Decaëns,Nico Eisenhauer, Olga Ferlian, Carlos António Guerra, Birgitta König‐Ries, Alberto Orgiazzi,Kelly S. Ramirez, David J. Russell, Michiel Rutgers, Diana H. Wall, Erin K. Cameron (2019) Toward an integrative understanding of soil biodiversity Biological Reviews,

10.1111/brv.12567
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Biological ReviewsEERIDCFE
N’Dri, A. B.`, Koné, A. W.`, Loukou, S. K. K.`, Barot, S.*, & Gignoux, J.* (2019). Carbon and nutrient losses through biomass burning, and links with soil fertility and yam (Dioscorea alata) production. Experimental Agriculture, 55(5), 738–751.
10.1017/S0014479718000327
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Experimental AgricultureEMSDCFE
Czuppon, P.^, Constable G.W.A. (2019). Invasion and extinction dynamics of mating types under facultative sexual reproduction, Genetics 213 (2): 567-580​10.1534/genetics.119.302306
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GeneticsEERIDCFE
Portier P, Pédron J*, Taghouti G`, Fischer-Le Saux M, Caullireau E, Bertrand C^, Laurent A, Chawki K, Oulgazi S`, Moumni M`, Andrivon D​, Dutrieux C, Faure D​, Hélias V, Barny MA* (2019) Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov.,isolated from streams and symptoms on diverse plants. Int J Syst Evol Microbiol. 69(10):3214-2310.1099/ijsem.0.003611
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International Journal of Systematic and Evolutionary MicrobiologyCoMiCDCFE
Phillips, H.R.P., Guerra, C.A., Bartz, M.L.C., Briones, M.J.I., Brown, G., Crowther, T.W., Erlian, O., Gongalsky, K.B., Hoogen, J. van den, Krebs, J., Orgiazzi, A., Routh, D., Schwarz, B., Bach, E.M., Bennett, J., Brose, U., Decaëns, T., König-Ries, B., Loreau, M., Mathieu, J.*, Mulder, C., Putten, W. van der, Ramirez, K.S., Rillig, M.C., Russell, D., Rutgers, M., Thakur, M.P., Vries, F.T. de, Wall, D., Wardle, D., Arai, M., Ayuke, F.O., Baker, G.H., Beauséjour, R., Bedano, J.C., Birkhofer, K., Blanchart, E., Blossey, B., Bolger, T., Bradley, R.L., Callaham, M.A., Capowiez, Y., Caulfield, M.E., Choi, A., Crotty, F.V., Dávalos, A., Cosin, D.J.D., Dominguez, A., Duhour, A.E., Eekeren, N. van, Emmerling, C., Falco, L.B., Fernández, R., Fonte, S.J., Fragoso, C., Franco, A.L.C., Fugère, M., Fusilero, A.T., Gholami, S., Gundale, M.J., López, M.G., Hackenberger, D.K., Hernández, L.M., Hishi, T., Holdsworth, A.R., Holmstrup, M., Hopfensperger, K.N., Lwanga, E.H., Huhta, V., Hurisso, T.T., Iannone III, B.V., Iordache, M., Joschko, M., Kaneko, N., Kanianska, R., Keith, A.M., Kelly, C.A., Kernecker, M.L., Klaminder, J., Koné, A.W., Kooch, Y., Kukkonen, S.T., Lalthanzara, H., Lammel, D.R., Lebedev, I.M., Li, Y., Lidon, J.B.J., Lincoln, N.K., Loss, S.R., Marichal, R., Matula, R., Moos, J.H., Moreno, G., Morón-Ríos, A., Muys, B., Neirynck, J., Norgrove, L., Novo, M., Nuutinen, V., Nuzzo, V., P, M.R., Pansu, J., Paudel, S., Pérès, G., Pérez-Camacho, L., Piñeiro, R., Ponge, J.-F., Rashid, M.I., Rebollo, S., Rodeiro-Iglesias, J., Rodríguez, M.Á., Roth, A.M., Rousseau, G.X., Rozen, A., Sayad, E., Schaik, L. van, Scharenbroch, B.C., Schirrmann, M., Schmidt, O., Schröder, B., Seeber, J., Shashkov, M.P., Singh, J., Smith, S.M., Steinwandter, M., Talavera, J.A., Trigo, D., Tsukamoto, J., Valença, A.W. de, Vanek, S.J., Virto, I., Wackett, A.A., Warren, M.W., Wehr, N.H., Whalen, J.K., Wironen, M.B., Wolters, V., Zenkova, I.V., Zhang, W., Cameron, E.K. & Eisenhauer, N. (2019) Global distribution of earthworm diversity. Science. 366 (6464) : 480-48510.1126/science.aax4851
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ScienceEERIDCFE
Giese, B., Frieß, J., Barton, N., Messer, P., Débarre, F., Schetelig, M., … & Boëte, C. (2019). Gene Drives: Dynamics and Regulatory Matters—A Report from the Workshop “Evaluation of Spatial and Temporal Control of Gene Drives,” April 4–5, 2019, Vienna.

10.1002/bies.201900151
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BioEssaysEERIDCFE
Girardin, L., Calvez, V., & Débarre, F.* (2019). Catch me if you can: a spatial model for a brake-driven gene drive reversal. Bulletin of mathematical biology, 81(12), 5054-5088.10.1007/s11538-019-00668-z
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Bulletin of Mathematical BiologyEERIDCFE
Lerch T.Z.*, Dignac M.-F.*, Thevenot M., Mguerchi C.°, Houot S. (2019) Chemical changes during composting of plant residues reduce their mineralisation in soil and cancel the priming effect. Soil Biology and Biochemistry, 136: 107525. 10.1016/j.soilbio.2019.107525
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Soil Biology and BiochemistryCoMiCDCFE ; BioDISDCFE
Czuppon, P.^, Rogers D.W. (2019) Evolution of mating types in finite populations: the precarious advantage of being rare, Journal of Evolutionary Biology 32: 1290-129910.1111/jeb.13528
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Journal of Evolutionary BiologyEERIDCFE
Ropars, L., Dajoz, I, Fontaine, C., Muratet, A. & Geslin, B. 2019. Wild pollinator activity negatively related to honey bee colony densities in urban context. Plos One10.1371/jourl.pone.0222316
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PLoS ONEEERIDCFE
Armani M, Charles-Dominique T*, Barton KE, Tomlinson KW.  (2019) Developmental constraints and resource environment shape early emergence and investment in spines in saplings. Annals of Botany.10.1093/aob/mcz152
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Annals of BotanyEMSDCFE
Changey F., Meglouli H., Fontaine J., Magnin-Robert M., Lerch T.Z.*, Lounès-Hadj Sahraoui A. (2019) Initial microbial status modulates mycorrhizal inoculation effect on rhizosphere microbial communities. Mycorrhiza 29(5): 475-487.10.1007/s00572-019-00914-1
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MycorrhizaBioDISDCFE
​Mächler E., Little C.J., Wüthrich R., Alther R., Fronhofer E.A., Gounand I.*, Harvey E., Hürlemann S., Walser J.-C., and Altermatt F. (2019) Assessing different components of biodiversity across a river network using eDNA. Environmental DNA 1 : 290-30110.1002/edn3.33
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Environmental DNAEERIDCFE
Kéfi S., Domínguez‐García V., Donohue I., Fontaine C., Thébault E.*, Dakos V. (2019) Advancing our understanding of ecological stability. Ecology Letters, 22, 1349-1356.​10.1111/ele.13340
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Ecology LettersEERIDCFE
Débarre, F.* (2019). Imperfect strategy transmission can reverse the role of population viscosity on the evolution of altruism. Dynamic Games and Applications, 1-32.10.1007/s13235-019-00326-y
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Dynamic Games and ApplicationsEERIDCFE
Dong B, Charles-Dominique T*, Corlett RT, Quan R-C, Chen Z. (2019) The uniqueness of spider lactation in arthropods. Science e-Letter. 🔗 HAL Science e-LetterEMSDCFE
Oulghazi S`, Pédron J*, Cigna J, Lau YY, Moumni M`, Van Gijsegem F*, Chan KG, Faure D (2019) Dickeya undicola sp. nov., a novel species for pectinolytic isolates from surface waters in Europe and Asia. Int J Syst Evol Microbiol. 69(8): 2440-244410.1099/ijsem.0.003497
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International Journal of Systematic and Evolutionary MicrobiologyCoMiCDCFE
Blouin, M., Barrere J., Meyer N., Lartigue S., Barot, S.* Mathieu* (2019)Vermicompost significantly affects plant growth. A meta-analysis.Agronomy for Sustainable Development, 39: 3410.1007/s13593-019-0579-x
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Agronomy for Sustainable DevelopmentEERIDCFE ; EMSDCFE
Le H.T.~, Rochelle-Newall E.*, Ribolzi O., Janeau J.L.*, Huon S.*, Latsachack K.`, Pommier T. (2020). Land use strongly influences soil organic carbon and bacterial community loss in runoff in tropical Uplands. Land  Degradation Development  10.1002/ldr.3433
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Land Degradation & DevelopmentF2ZCSols_ZC ; CoMiCDCFE ; FESTSols_ZC
Rode, N. O., Estoup, A., Bourguet, D., Courtier-Orgogozo, V., & Débarre, F.* (2019). Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks. Conservation Genetics, 1-20.
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Conservation GeneticsEERIDCFE
Perveen, N.~’, S. Barot*, V. Maire, M. F. M. Francesca Cotrufo, T. Shahzad’, M. R. Siddiq, E. Blagodatskaya, W. Ding, B. Dimassi, B. Mary, and S. Fontaine. 2019. Universality of priming effect: an analysis using thirty five soils with contrasted properties sampled from five continents. Soil Biology and Biochemistry 134:162-171.10.1016/j.soilbio.2019.03.027
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Soil Biology and BiochemistryEMSDCFE
Pédron J*, Van Gijsegem F* (2019) Diversity in the Bacterial Genus Dickeya Grouping Plant Pathogens and Waterways Isolates. OBM Genetics 2019, Volume 3, Issue 4.10.21926/obm.genet.1904098OBM GeneticsCoMiCDCFE
​Diaz Pauli, B., Garric, S.° , Evangelista, C., L. Asbjørn Vøllestad and Eric Edeline, E.*. Selection for small body size favours contrasting sex-specific life histories, boldness and feeding in medaka, Oryzias latipes. BMC Evol Biol 19, 127 (2019). 10.1186/s12862-019-1460-x
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BMC Evolutionary BiologyEERIDCFE
Duong, T. T.`, T. T. H. Hoang`, T. K. Nguyen`, T. P. Q. Le`, N. D. Le`, D. K. Dang`, X. Lu`, M. H. Bui`, Q. H. Trinh`, T. H. V. Dinh`, T. D. Pham` & E. Rochelle-newall, 2019. Factors structuring phytoplankton community in a large tropical river: Case study in the Red River (Vietnam). Limnologica 76:82-93
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LimnologicaCoMiCDCFE
​Clement, C~., Pierret A*., Maeght JL., Hartmann C*., Xayyathip K’., Soulileuth B’., Sounyafong P.’, Latsachack K’., Thammahacksa C’., Sengtaheuanghoung O’.  (2019) Linking tree‐rooting pro les to leaf phenology: a first attempt on Tectona Grandis Linn F. Trees 33, pages 1491–1504 (2019).10.1007/s00468-019-01876-9
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TreesCoMiCDCFE ; BioDISDCFE
Alhajeri B.H., Fourcade Y.* (2019) High correlation between species-level environmental data estimates extracted from IUCN expert range maps and from GBIF occurrence data. Journal of Biogeography, 46: 1329-1341

10.1111/jbi.13619Journal of BiogeographyBioDISDCFE
Bienvenu, F., Débarre, F.*, & Lambert, A. (2019). The split-and-drift random graph, a null model for speciation. Stochastic processes and their applications, 129(6), 2010-2048.

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​Zeitoun V., Auetrakulvit P’., Zazzo A., Pierret A*., Frere S., Forestier H. (2019) Discovery of an outstanding Hoabinhian site from the Late Pleistocene at Doi Pha Kan (Lampang province, northern Thailand), Archaeological Research in Asia, 18, 1-16,10.1016/j.ara.2019.01.002
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Archaeological Research in AsiaCoMiCDCFE
​Bisson, A., S. Boudsocq ~, C. Casenave, S. Barot*, R. J. Manlay, J. Vayssières, D. Masse, and T. Daufresne. 2019. West African mixed farming systems as meta-ecosystems: an ecological source-sink modelling approach of the nitrogen cycle and crop production. Ecological Modelling 412:108803.10.1016/j.ecolmodel.2019.108803
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Ecological ModellingEMSDCFE
Chassé, P.”, C. Pélosi,J.-C. Lata*, and S. Barot*. 2019. Impact of crop genetic diversity on a litter consumer. Basic and Applied Ecology 36:1-1110.1016/j.baae.2019.02.002
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Basic and Applied EcologyEMSDCFE
Jusselme, M.D., Pruvost, C., Motard, E. Giusti-Miller, S., Frechault, S., Alphonse, V., Dajoz, I. & Mora, P. 2019. Increasing the ability of a green roof to provide ecosystem services by adding organic matter and earthworms. Applied Soil Ecology 143: 61-69.10.1016/j.apsoil.2019.05.028
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Applied Soil EcologyEERIDCFE ; EMSDCFE
Picot A~, Monnin T*, Loeuille N* (2019) From apparent competition to facilitation: impacts of consumer niche construction on the coexistence and stability of consumer-resource communities. Functional Ecology 33:1746-175710.1111/1365-2435.13378
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Functional EcologyESEAEEcoEvo ; EERIDCFE
Abbadie L.* & Colson F. 2019. La nature en ville au cœur des objectifs du développement durable. H & B, La Revue d’Humanité et Biodiversité, 5 : 94-100.​H & B, La Revue d’Humanité et BiodiversitéEMSDCFE
Konaré, S.~, Boudsocq, S., Gignoux, J.*, Lata, J.-C.*, Raynaud, X.*, & Barot, S.* (2019). Effects of Mineral Nitrogen Partitioning on Tree–Grass Coexistence in West African Savannas. Ecosystems, 22: 1676-1690.10.1007/s10021-019-00365-x
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EcosystemsEMSDCFE
Daviere A, Sotomski M, Audibert A, Carol P*, Hubert S, Lebreton S*, Louvet-Vallee S, Pedron J, PuyaubertJ, Kraepiel Y, Lacoste J.(2019) Synergistic toxicity between glyphosate and 2,4-dinitrophenol on budding yeast is not due to H2O2-mediated oxidative stress. Matters 5 (4), e201903000030
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Harmon, L.J., Andreazzi, C.S., Débarre, F.*, Drury, J., Goldberg, E.E., Martins, A.B., Melián, C.J., Narwani, A., Nuismer, S.L., Pennell, M.W. and Rudman, S.M. (2019). Detecting the macroevolutionary signal of species interactions. Journal of evolutionary biology, 32(8), 769-782.10.1111/jeb.13477
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Journal of Evolutionary BiologyEERIDCFE
​Koffi KF’~, N’Dri AB’, Lata J-C*, Konaté S’, Srikanthasamy T~, Konaré S’, Konan M’,Barot S* 2019. Effect of fire regimes on the demographic parameters of the perennial tussock grasses of a humid savanna. J Veg Sci 30:950–962.10.1111/jvs.12788
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Journal of Vegetation ScienceEMSDCFE
Hanache P., Spataro T.*, Firmat C., ​Boyer N., Fonseca P., Médoc V. (2020) Noise-induces reduction in the attack rate of a planktivorous freshwater fish revealed by functional response analysis. Freshwater Biology, 65: 75-85
10.1111/fwb.13271
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Freshwater BiologyEERIDCFE
​Dakos, V., Mathews, B., Hendry, A., Levine, J., Loeuille, N.*, Norberg, J., Nosil, P., Scheffer, M., de Meester, L. 2019 Ecosystem tipping points in an evolving world. Nature Ecology & Evolution 3(3):355-362


10.1038/s41559-019-0797-2
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Nature Ecology and EvolutionEERIDCFE
​Lundström, N., Loeuille, N.*, Meng, X., Bodin, M., Brannström, A. 2019 Meeting yield and conservation objectives by balancing harvesting of juveniles and adults. American Naturalist, 193 (3), 373-390

10.1086/701631
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The American NaturalistEERIDCFE
Mugler, C., Ribolzi, O., Janeau, J.L.*, Rochelle-Newall, E.*, Latsachack, K.`, Thammahacksa, C.`, Viguier, M., Jarde, E., Henri-Des-Tureaux*, T., Sengtaheuanghoung, O.`, Valentin, C.*, 2019. Experimental and modelling evidence of short-term effect of raindrop impact on hydraulic conductivity and overland flow intensity. Journal of Hydrology 570, 401-410.10.1016/j.jhydrol.2018.12.046
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Journal of HydrologyFESTSols_ZC ; F2ZCSols_ZC ; CoMiCDCFE
Dupont L.*, Pauwels M., Dume C.°, Deschins V.°, Audusseau H.^, Gigon A.*, Dubs F., Vandenbulcke F. (2019) Genetic variation of the epigeic earthworm Lumbricus castaneus populations in urban soils of the Paris region (France) revealed using eight newly developed microsatellite markers. Applied Soil Ecology, 135 : 33-3710.1016/j.apsoil.2018.11.004
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Applied Soil EcologyBioDISDCFE
Cameron E., Martins I., Lavelle P., Mathieu J.*, Tedersoo L., Gottshall F., Guerra C., Hines J., Patoine G., Siebert J., Winter M., Cesarz S., Delgado-Baquerizo M., Ferlian O., Fierer N., Kreft H., T. Lovejoy, Montanarella L., Orgiazzi A., Pereira H., Phillips H., Settele J., Wall D., Eisenhauer N. Global mismatches in aboveground and belowground biodiversity. Conservation Biology, 33: 1187-119210.1111/cobi.13311
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Conservation BiologyEERIDCFE
Barot, S*., L. Abbadie*, A. Auclerc, C. Barthélémy, E. Bérille, P. Billet, P. Clergeau, J.-N. Consales, M. Deschamp-Cottin, A. David~, C. Devigne, V. Dham, Y. Dusza~, A. Gaillard, E. Gonzalez, M. Hédont, D. Labarraque, A.-M. Le Bastard, J.-L. Morel, Y. Petit-Berghem, E. Rémy, E. Rochelle-Newall* & M. Veyrières, 2019. Urban ecology, stakeholders and the future of ecology. Science of The Total Environment 667:475-48410.1016/j.scitotenv.2019.02.410
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Science of the Total EnvironmentCoMiCDCFE ; EMSDCFE
​Berg, J.S., Jézéquel, D., Duverger, A., Lamy, D.*,  Laberty-Robert, C., Miot, J. (2019) Microbial diversity involved in iron and cryptic sulfur cycling in the ferruginous, low-sulfate waters of Lake Pavin. PlosOne, 14:e021278710.1371/journal.pone.0212787
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PLoS ONECoMiCDCFE
Hutchinson M.C., Bramon Mora B., Pilosof S., Barner A.K., Kéfi S., Thébault E.*, Jordano P., Stouffer D.B. (2019) Seeing the forest for the trees: Putting multilayer networks to work for community ecology. Functional Ecology, 33, 206-217.​10.1111/1365-2435.13237
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Functional EcologyEERIDCFE
Pédron J*, Bertrand C^, Taghouti G, Portier P, Barny MA*. (2019) Pectobacterium aquaticum sp. nov., isolated from waterways. Int J Syst Evol Microbiol. 69(3): 745-751​10.1099/ijsem.0.003229
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International Journal of Systematic and Evolutionary MicrobiologyCoMiCDCFE
​Zeitoun V., Bourdon E., Latsachack K.O.’, Pierret A*, Singthong S’, Baills H., Forestier H. (2019) Discovery of a new open-air Hoabinhian site in Luang Prabang province (Lao PDR). Dating and technological study of the lithic assemblage. Comptes Rendus Palevol, 18, 142-157.10.1016/j.crpv.2018.05.003
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Comptes rendus PalevolCoMiCDCFE
​Loeuille, N.* 2019 Eco-evolutionary dynamics in a disturbed world: implications for the maintenance of ecological networks. F1000Research, 2019, 8(F1000 Faculty Rev):97

10.12688/f1000research.15629.1F1000ResearchEERIDCFE
Quénéa K.,Andrianjara I.~°,Rankovic A.~, Gan E., Aubry E., Lata J.C.*, Barot S.*, Castrec-Rouelle M. (2019) Influence of the residence time of street trees and their soils on trace element contamination in Paris (France). Environmental Science and Pollution Research, 26 (10): 9785-979510.1007/s11356-019-04405-w
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Environmental Science and Pollution ResearchEMSDCFE ; APCEIPE ; EERIDCFE
Koffi K.F.~`, N’Dri A.B.`, Lata J.C.*, Konaté S.`,Srikanthasamy T.~,Konan M.`, Barot S.* (2019) Effect of fire regime on the grass community of the humid savanna of Lamto, Ivory Coast. Journal of Tropical Ecology 35 (1): 1-710.1017/s0266467418000391
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Journal of Tropical EcologyEMSDCFE
James S.W., Bartz M.L.C., Stanton D.W.G., Conrado A.C.,Dupont L.*,Taheri S.~, Da Silva E., Cunha L., Brown G.G. (2019) A neotype for Pontoscolex corethrurus (Müller, 1857) (Clitellata). Zootaxa, 4545 (1) : 124-13210.11646/zootaxa.4545.1.7
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ZootaxaBioDISDCFE
Alič Š, Pédron J*, Dreo T, Van Gijsegem F* (2019) Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates. BMC Genomics. 20(1): 3410.1186/s12864-018-5332-3
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BMC GenomicsCoMiCDCFE
Essarts YR des, Pédron J*, Blin P, Dijk EV, Faure D, Gijsegem FV* (2019) Common and distinctive adaptive traits expressed in Dickeya dianthicola and Dickeya solani pathogens when exploiting potato plant host. Environmental Microbiology.21(3), 1004–101810.1111/1462-2920.14519
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Environmental MicrobiologyCoMiCDCFE
Estrela, S., Libby, E., Van Cleve, J., Débarre, F.*, Deforet, M., Harcombe, W. R., Jorge Peña, Sam P. Brown, & Hochberg, M. E. (2019). Environmentally mediated social dilemmas. Trends in ecology & evolution, 34(1), 6-18.10.1016/j.tree.2018.10.004
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Trends in Ecology and EvolutionEERIDCFE
N’Dri, A. B.`, Soro, T. D.`, Gignoux, J.*, Dosso, K.`, Koné, M.`, N’Dri, J. K.`, Koné, N.A.`, Barot, S.* (2018). Season affects fire behavior in annually burned humid savanna of West Africa. Fire Ecology, 14, 5.10.1186/s42408-018-0005-9
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Fire EcologyEMSDCFE
Watteau F., Dignac M.-F.*, Bouchard A., Revallier A., Houot S. 2018. Microplastic detection in soil amended with municipal solid waste composts as revealed by transmission electronic microscopy and Pyrolysis/GC/MS. Frontiers in Sustainable Food Systems, 2: 8110.3389/fsufs.2018.00081
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Frontiers in Sustainable Food SystemsCoMiCDCFE
​Prosnier, L.~, Médoc, V.* & Loeuille, N.* 2018. Parasitism effects on coexistence and stability within simple trophic modules. Journal of Theoretical Biology, 458: 68-77


10.1016/j.jtbi.2018.09.004
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Journal of Theoretical BiologyEERIDCFE
Dubs, F.^, A. Vergnes, E. Mirlicourtois”, I. Le Viol, C. Kerbiriou, J. Goulnik, S. Belghali, L. Bentze, S. Barot*, and E. Porcher.2019. Positive effects of wheat variety mixtures on aboveground arthropods are weak and variable.Basic and Applied Ecology33:66-78.10.1016/j.baae.2018.07.008
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Basic and Applied EcologyEMSDCFE
Abbadie L.* (2018). L’effondrement de la biodiversité, jusqu’où ? Revue Juridique de l’Environnement, 3 : 455-457Rev. Jur. Env.EMSDCFE
​ Yoni M.~ , Sako A, Abbadie L.* & Serpantié G. 2018. Carbon and nitrogen dynamics of soil organic matter fractions in thickets and intergrowth areas of Sudanian savannah grasslands, Bondoukuy, Western Burkina Faso. Environment and Natural Resources Research 8 : 16-3110.5539/enrr.v8n4p16
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Env. Nat. Res.EMSDCFE
Schmidt, H., Nunan, N.*, Höck, A., Eickhorst, T., Kaiser, C., Woebken, D., Raynaud, X.*, 2018. Recognizing Patterns: Spatial Analysis of Observed Microbial Colonization on Root Surfaces. Frontiers in Environmental Science 6.10.3389/fenvs.2018.00061
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Frontiers in Environmental ScienceBioDISDCFE ; EMSDCFE
Harvey E., Gounand* I., Fronhofer E.A., and Altermatt F. (2018) Disturbance reverses classic biodiversity predictions in river-like landscapes. Proceedings of the Royal Society B 285(1893): 2018244110.1098/rspb.2018.2441
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Proceedings of the Royal Society BEERIDCFE
Majdi N., Hette-Tronquart N., Auclair E., Bec A., Chouvelon T., Cognie B., Danger M., Decottignies P., Dessier A., Desvilettes C., Dubois S., Dupuy C., Fritsch C., Gaucherel C., Hedde M., Jabot F., Lefebvre S., Marzloff M.P., Pey B., Peyrard N., Powolny T., Sabbadin R., Thébault E.*, Perga M.-E. (2018) There’s no harm in having too much: A comprehensive toolbox of methods in trophic ecology. Food webs, 17, e00100.10.1016/j.fooweb.2018.e00100
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Food websEERIDCFE
Beau R.* (2018)​, L’éthique environnementale comme travail du soi relationnel : la voie des pratiques de l’ordinaire, Cités, 76 (4), 109-11610.3917/cite.076.0109
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CitésEMSDCFE
Fourcade Y.* ,Åström S., Öckinger E. (2019) Climate and land-cover change alter bumblebee species richness and community composition in subalpine areas. Biodiversity and Conservation, 28: 639–653


10.1007/s10531-018-1680-1Biodiversity and ConservationBioDISDCFE
Ribolzi, O., Lacombe, G., Pierret, A.*, Robain, H.*, Sounyafong, P.`, de Rouw, A.*, Soulileuth, B.`, Mouche, E., Huon, S.*, Silvera, N.*, Latxachak, K.O.`, Sengtaheuanghoung, O.`, Valentin, C.* Interacting land use and soil surface dynamics control groundwater outflow in a montane catchment of the lower Mekong basin. Agric. Ecosyst. Environ. 268, 90–102​10.1016/j.agee.2018.09.005
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Agriculture Ecosystems & EnvironmentF2ZCSols_ZC ; CoMiCDCFE
​Dance D.A.B., Knappik M., Dittrich S., Viengmon D., Silisouk J.’, Vongsouvath M.’, Rattanavong S.,’ Pierret A.*, Newton P.N.,  Amornchai P’, Vanaporn Wuthiekanun’, Langla S., Limmathurotsakul D’. (2018) Evaluation of consensus method for the culture of Burkholderia pseudomallei in soil samples from Laos. Wellcome Open Research.10.12688/wellcomeopenres.14851.2
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Wellcome Open ResearchCoMiCDCFE
​Gounand I.*, Little C.J., Harvey E., and Altermatt F. (2018) Cross-ecosystem carbon flows connecting ecosystems worldwide. Nature Communications 9(1) : 482510.1038/s41467-018-07238-2
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Nature CommunicationsEERIDCFE
Le H.T.~, Rochelle-Newall E.*, Auda Y., Ribolzi O., Sengtaheuanghoung O.’, Thébault E.*, Soulileuth B.’, Pommier T. (2018) Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment. FEMS microbiology ecology, 94, fiy155.​10.1093/femsec/fiy155
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FEMS Microbiology EcologyEERIDCFE ; CoMiCDCFE
Fourcade Y.*, BesnardA.G., Beslot E., Hennique S., Mourgaud G., Berdin G., Secondi J (2018) Habitat selection in a dynamic seasonal environment: Vegetation composition drives the choice of the breeding habitat for the community of passerines in floodplain grasslands. Biological Conservation, 228: 301-309

10.1016/j.biocon.2018.11.007Biological ConservationBioDISDCFE
Prud’homme C., Moine O., Mathieu J.*, Saulnier-Copard S., Antoine P. (2018) High-resolution quantification of earthworm calcite granules from western European loess sequences reveals stadial-interstadial climatic variability during the Last Glacial,Boreas. 48(1) : 257-26810.1111/bor.12359
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Baveye, P.C., Otten, W., Kravchenko, A., Balseiro-Romero, M., Beckers, É., Chalhoub, M., Darnault, C., Eickhorst, T., Garnier, P., Hapca, S., Kiranyaz, S., Monga, O., Mueller, C.W., Nunan, N.*, Pot, V., Schlüter, S., Schmidt, H., Vogel, H.-J., 2018. Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain. Frontiers in Microbiology 9​10.3389/fmicb.2018.01929
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Faye P`, Bertrand C^, Pédron J*, Barny MA* (2018) Draft genomes of “Pectobacterium peruviense” strains isolated from fresh water in France. Stand Genomic Sci. 13: 2710.1186/s40793-018-0332-0
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Abbadie L.* 2018. Ecologie urbaine : quoi, pourquoi, comment ? Pollution Atmosphérique 237-238. ​10.4267/pollution-atmospherique.6611Pollution AtmosphériqueEMSDCFE
Van Groenigen, J.W., Agnelli, A., Bai, J., Capowiez, Y., Cayuela, M., Kögel-Knabner, I., Laird, D., McBratney, A., Morgan, C., Nater, E.A., Nunan, N., Said-Pullicino, D., Vepraskas, M., 2018. Citation stacking in soil science articles: our response to the open letter by concerned early-career soil scientists. Geoderma 328, 119–120.10.1016/j.geoderma.2018.03.023GeodermaBioDISDCFE
Barthod J.~, Rumpel C.*, Calabi-Floody M., Mora M-L., Bolan N., Dignac M-F.* (2018) Adding worms during composting with red mud and fly ash reduces CO2 emissions and increases plant available nutrient contents. Journal of Environmental Management, 222: 207-21510.1016/j.jenvman.2018.05.079
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Shahzad, T.’, M. I. Rashid’, V. Maire, S. Barot*, N. Perveen’, G. Alvarez, C. Mougin, and S. Fontaine. 2018. Root penetration in deep soil layers stimulates mineralization of millennia-old organic carbon. Soil Biology and Biochemistry 124:150-160.10.1016/j.soilbio.2018.06.010
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Kone, M.’, K. Dosso’, C. D. Yode’, A. E. Kouakou’, A. B. N’Dri’, N. G. A. Kone’, J. K. N’Dri’, W. Dekoninck, and S. Barot*.2018. Short-term changes in the structure of ant assemblages in a Guinean savanna under differing fire regimes at Lamto Scientific Reserve, Côte d’Ivoire.Journal of Tropical Ecology34:326-335.10.1017/S0266467418000305Journal of Tropical EcologyEMSDCFE
Ropars, L.; Dajoz, I. & Geslin, B. 2018. La diversité des abeilles Parisiennes. Osmia, 7: 1-6.10.47446/OSMIA7.3
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Dubs F.^, Le Roux X., Allard V., Andrieu B., Barot S.*, et al., Carmignac D.*, et al., Lata J.C.*, et al., Niboyet A.* et al. and Enjalbert J. (2018) An experimental design to test the effect of wheat variety mixtures on biodiversity and ecosystem services. hal-01843564🔗 HAL
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Van Gijsegem F*, Bitton F, Laborie A-L, Kraepiel Y*, Pédron J* (2018) Characterization of the early response of Arabidopsis thaliana to Dickeya dadantii infection using expression profiling. bioRxiv 415380; 10.1101/415380
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Obiakara M.C., Fourcade Y.* (2018) Climatic niche and potential distribution of Tithonia diversifolia (Hemsl.) A. Gray in Africa. PlosOne, 13: e0202421


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Sengtaheuanghoung O., Ribolzi O., Rochelle-Newall E. J.*, Boithias L., Evrard O., Henri-des-Tureaux T.*, Huon S.*, Janeau J.-L*., Latsachack K*., Lefèvre I., Mouche E., Robain H.*, de Rouw A.*, Xayyathip K.*, Silvera N.*, Sisouvanh P~., Soulileuth B.*, Sounyafong P*., Thammahacksa C*., Viguier M., Lacombe G., Valentin C. & Pierret. A.*, Interactions between land use, fluxes of water and sediments, and the spread of bacterial contaminants in the uplands of northern Lao PDR. In: Nations, F. A. O. (ed) Proceedings of the Global Symposium on Soil Pollution 2018, Rome, Italy, 2018. FAO, p 976.FAO EditionsCoMiCDCFE ; BioDISDCFE ; F2ZCSols_ZC ; FESTSols_ZC
Nkwain Y.F., Demyan M. S., Rasche F., Dignac M.-F.*, Schulz E., Kätterer T., Müller T., Cadisch G. (2018) Coupling pyrolysis with mid-infrared spectroscopy (Py-MIRS) to fingerprint biochemical quality of soil organic matter. Journal of Analytical and Applied Pyrolysis, 133: 176-18410.1016/j.jaap.2018.04.004
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Chatelain M.^ & Mathieu J.* (2017)How good are epigeic earthworms at dispersing? An investigation to compare epigeic to endogeic and anecic groups. Soil Biology and Biochemistry, 111, 115-12310.1016/j.soilbio.2017.04.004
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Decaëns T., Martins M.B., Feijoo A., Oszwald J., Dolédec S., Mathieu J.*, de Sartre X.A. , Bonilla D., Brown G., Criollo Y.A.C, Dubs D., Furtado I.S., Gond V., Gordillo E., Le Clec’h S., Marichal M., Mitja D., Miranda de Souza I., Praxedes C., Rougerie R., Ruiz D.H., Otero J.T., Sanabria C., Velasquez A., Zararte L.E.M., Lavelle P. ​Biodiversity loss along a gradient of deforestation in Amazonian agricultural landscapes. Conservation Biology, 32(6) : 1380-139110.1111/cobi.13206
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Conservation BiologyEERIDCFE
Connallon, T., Débarre, F.*, & Li, X. Y. (2018). Linking local adaptation with the evolution of sex differences. Philosophical Transactions of the Royal Society B: Biological Sciences10.1098/rstb.2017.0414
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Abbadie L.* 2018. Fertilité des sols : la qualité par la vie. Responsabilité & Environnement 91 : 10-12.​10.3917/re1.091.0010Responsabilité & EnvironnementEMSDCFE
Abbadie L.* 2018. L’effondrement de la biodiversité, jusqu’où ? Revue Juridique de l’Environnement, 3 : 455-457.🔗 HAL Revue Juridique de l’EnvironnementEMSDCFE
Mathieu J.* (2018) EGrowth: a global database on intraspecific body growth variability in earthworm. Soil Biology and Biochemistry, 122: 71-8010.1016/j.soilbio.2018.04.004
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Soil Biology and BiochemistryEERIDCFE
Riera, E., Lamy, D.*, Goulard, C.,Francour, P.,Hubas, C. (2018) ​Biofilm monitoring as a tool to assess the efficiency of artificial reefs as substrates : Toward 3D printed reefs. Ecological Engineering, 120:230-237
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Ecological EngineeringCoMiCDCFE
​Changey F.^, Bagard M.*, Souleymane M.°, Lerch T.Z.* (2018) Cascading effects of elevated ozone on wheat rhizosphere microbial communities depend on temperature and cultivar sensitivity. Environmental Pollution 242: 113-12510.1016/j.envpol.2018.06.073
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Fouilland, E., A. Trottet, C. Alves-de-Souza, D. Bonnet, T. Bouvier, M. Bouvy, S. Boyer, L. Guillou, E. Hatey, H. Jing, C. Leboulanger, E. Le Floc’h, H. Liu, S. Mas, B. Mostajir, J. Nouguier, D. Pecqueur, E. Rochelle-Newall*, C. Roques, C. Salles, M.-G. Tournoud, C. Vasseur & F. Vidussi, 2017. Significant Change in Marine Plankton Structure and Carbon Production After the Addition of River Water in a Mesocosm Experiment. Microbial Ecology 74(2):289-30110.1007/s00248-017-0962-6
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Microbial EcologyCoMiCDCFE
Le, T. P. Q., N. D. Le, V. N. Dao, E. Rochelle-Newall*, T. M. H. Nguyen~, C. Marchand, T. T. Duong & T. X. B. Phung, 2018. Change in carbon flux (1960–2015) of the Red River (Vietnam). Environmental Earth Sciences 77(18):658 10.1007/s12665-018-7851-2
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Zimmermann R. E., Ribolzi O., Pierret A,* Rattanavong S.’, Robinson M. T., Newton P. N., Davong V.’, Auda Y., Zopfi J., Dance D. A. B. (2018) Rivers as carriers and potential sentinels for Burkholderia pseudomallei in Laos. Scientific Reports – Nature, 2018, 8, p. art. 8674 [7p.]. ISSN 2045-2322.10.1038/s41598-018-26684-y​
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Scientific ReportsCoMiCDCFE
Débarre, F*., Rode, N. O., & Ugelvig, L. V. (2018). Gender equity at scientific events. Evolution letters, 2(3), 148-158.
10.1002/evl3.49
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Evolution LettersEERIDCFE
Perga, M.-O., Danger M., Dubois S., Fritch C., Gaucherel C., Hubas C., Jabot F., Lacroix G.*, Lefebvre S., Marmonier P., Bec A. (2018) Forces, failles et opportunités de la recherche française en écologie trophique [Strengths, weaknesses, and opportunities of French research in trophic ecology]. Comptes Rendus Biologies, 341: 301-31410.1016/j.crvi.2018.05.001
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​Koffel, T., Boudsocq, S., Loeuille, N.~, Daufresne, T. 2018. Facilitation versus competition driven succession: the key role of resource ratio. Ecology Letters, 21(7) 1010-1021

10.1111/ele.12966
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Ecology LettersEERIDCFE
​Loeuille, N.* & Hauzy, C.^ 2018. Multidimensionality of plant defenses and herbivore niches: implications for eco-evolutionary dynamics. Journal of Theoretical Biology, 445, 110-119

10.1016/j.jtbi.2018.02.006
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Journal of Theoretical BiologyEERIDCFE
Borg, J., L. Kiær, C. Lecarpentier, I. Goldringer, A. Gauffreteau, S. Saint-Jean, S. Barot*, and J. Enjalbert. 2018. How to unfold the potential of cultivar mixtures in bread wheat: A meta-analysis perspective on diversification strategies and identification of lacks of knowledge. Field Crop Res. 221:298-31310.1016/j.fcr.2017.09.006
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​Gounand I.*, Harvey E., Little C.J., and Altermatt F. (2018) On embedding meta-ecosystems into a socioecological framework: a reply to Renaud et al. Trends in Ecology and Evolution, 33(7): 484-48610.1016/j.tree.2018.04.004
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Alic S, Van Gijsegem F,  Pédron J*,  Ravnikar M and  Dreo T (2018) Diversity within the novel Dickeya fangzhongdai sp., isolated from infected orchids, water and pears. Plant Pathology 67: 1612-1620.​10.1111/ppa.12866
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Rochelle-Newall E.*, Niboyet A.*, Jardillier L., Fiorini S., Chollet S., Llavata M., de Santis E., Barot S.*, Lacroix G.* (2018)Impacts of elevated atmospheric CO2 concentration on terrestrial-aquatic carbon transfer and a downstream aquatic microbial community. Aquatic Sciences, 80, Article Number: 2710.1007/s00027-018-0577-0
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Forey, E., M. Chauvat, S. F. M. Coulibaly, E. Langlois, S. Barot*, and J. Clause. 2018. Inoculation of an ecosystem engineer (Earthworm: Lumbricus terrestris) during experimental grassland restoration: Consequences for above and belowground soil compartments. Applied Soil Ecology125:148-155.10.1016/j.apsoil.2017.12.021
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Poblete-Grant P.°, Biron P.*, Bariac T.*, Cartes P.`, Mora M.L.L.`, Rumpel C*. (2019): Synergistic and antagonistic effects of poultry manure and phosphate rock on soil P availability, ryegrass production, and P uptake. Agronomy , 2019, 9, 191.10.3390/agronomy9040191
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Nguyen, T. M. H.~, G. Billen, J. Garnier, T. P. Q. Le, Q. L. Pham, S. Huon* & E. Rochelle Newall*, 2018. Organic carbon transfers in the subtropical Red River system (Viet Nam): insights on CO2 sources and sinks. Biogeochemistry 138(3):277-295.
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Barthod J.~, Rumpel C.*, Dignac M-F.* (2018) Improving the environmental footprint and properties of compost and vermicomposts through mineral, organic and biological additives. A review. Agronomy for Sustainable Development, 38:17​10.1007/s13593-018-0491-9
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Barot, S*. 2018. Can we predict the long term impact of earthworms on plant successions? Functional Ecology 32:596-598.10.1111/1365-2435.13020
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Functional EcologyEMSDCFE
Gaba, S., A. Alignier, S. Aviron, S. Barot*, M. Blouin, M. Hedde, F. Jabot, A. Vergnes, A. Bonis, S. Bonthoux, B. Bourgeois, V. Bretagnolle, R. Catarino, and C. Coux. 2018. Ecology for sustainable and multifunctional agriculture. 28: Ecology for agriculture.10.1007/978-3-319-90309-5
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Sustainable Agriculture Reviews EMSDCFE
Dubuisson, J. Y., Le Pechon, T, Bauret, L.; Rouhan, G.; Reeb, C.; Boucheron-Dubuisson, E.; Selosse, M. A.; Chaussidoni, C.; Dajoz, I; Pynee, K.; Grangaud, E; Robert, Y.; Tamont, J. M. & Hennequin, S. 2018.  Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Mascarene archipelago, with ecological implications. Phytotaxa 375 (1): 001–05810.11646/phytotaxa.375.1.1
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Pédron J*, Chapelle E, Alunni B, Van Gijsegem F* (2018) Transcriptome analysis of the Dickeya dadantii PecS regulon during the early stages of interaction with Arabidopsis thaliana. Mol Plant Pathol. 19(3): 647-663​10.1111/mpp.12549
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Molecular Plant PathologyCoMiCDCFE
Porco D., Chang C.-H.,Dupont L.*, James S., Richard B. , Decaëns T. (2018) A reference library of DNA barcodes for the earthworms from Upper Normandy: Biodiversity assessment, new records, potential cases of cryptic diversity and ongoing speciation. Applied Soil Ecology, 124 : 362-37110.1016/j.apsoil.2017.11.001
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Applied Soil EcologyBioDISDCFE
Sanders D., Thébault E.*, Kehoe R., van Veen F.J.F. (2018) Trophic redundancy reduces vulnerability to extinction cascades. Proc. Natl. Acad. Sci. USA, 115, 2419-2424​10.1073/ps.1716825115Proceeding of the National Academy of Sciences of the United States of America – PNASEERIDCFE
​Arditi R.^, Lobry C., Sari T. (2018) Asymmetric dispersal in the multi-patch logistic equation. Theoretical Population Biology, 120: 11-1510.1016/j.tpb.2017.12.006
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Theoretical Population BiologyEERIDCFE
​Lacombe G., Valentin C*, Sounyafong P.’, De Rouw A*, Soulileuth B.’, Silvera N*, Pierret A*, Sengtaheuanghoung O.’, Ribolzi O (2018). Linking crop structure, throughfall, soil surface conditions, runoff and soil detachment : 10 land uses analyzed in Northern Laos. Science of the Total Environment, 2018, 616, p. 1330-1338. ISSN 0048-9697.10.1016/j.scitotenv.2017.10.185
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Taheri S.~, James S.W., Roy V.*, Decaëns T., Williams B.W., Anderson F., Rougerie R., Chang C.-H., Brown G. G., Cunha L., Stanton D. W. G., Silva E.D., Chen J.-H., Lemmon A., Bartz M., Baretta D., Barois I., Lapied E., Coulis M., Dupont L.* (2018) Complex taxonomy of the ‘brush tail’ peregrine earthworm Pontoscolex corethrurus. Molecular Phylogenetics and Evolution, 124, 60-70.
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​Pierret A.*, Lacombe G. (2018) Hydrologic regulation of plant rooting depth : breakthrough or observational conundrum ?. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (12), p. E2669-E2670. ISSN 0027-8424.10.1073/pnas.1801721115Proceeding of the National Academy of Sciences of the United States of America – PNASCoMiCDCFE
Lata J.C.*, Dusza Y.~ , Abbadie L.*, Barot S.,* Carmignac D.*, Gendreau E.*, Kraepiel Y.*, Mériguet J., Motard E.* & Raynaud X*. 2017.Role of substrate properties in the provision of multifunctional green roof ecosystem services.Applied Soil Ecology 123 : 464-468.10.1016/j.apsoil.2017.09.012
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David A.~ , Boura A., Lata J.C., Rankovic A.~ , Kraepiel Y.*, Charlot C.°, Barot L.*, Abbadie L.* & Ngao J. 2017.Street trees in Paris are sensitive to spring and autumn precipitation and recent climate changes. Urban Ecosystems 21: 133-145. ​10.1007/s11252-017-0704-z
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Urban EcosystemsEMSDCFE ; EERIDCFE
Huyghe D., Mouthereau F., Sebilo M.*, Vacherat A., Segalen L., Richard P., Biron P.*, Bariac T. * (2018): Impact of topography, climate and moisture sources on isotopic composition (δ18O & δD) of rivers in the Pyrenees: Implications for topographic reconstructions in small orogens. Earth and Planetary Sciences Letters. 484 10.1016/j.epsl.2017.12.035
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Earth and Planetary Sciences LettersEMSDCFE
​Santschi F., Gounand I.*, Harvey E., and Altermatt F. (2018) Leaf litter diversity and structure of microbial decomposer communities modulate litter decomposition in aquatic system. Functional Ecology, 32(2): 522-53210.1111/1365-2435.12980
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Functional EcologyEERIDCFE
Simba L.D.’, Foord S.H.’, Thébault E.*, van Veen F.J.F., Joseph G.S.’, Seymour C.L.’ (2018) Indirect interactions between crops and natural vegetation through flower visitors: the importance of temporal as well as spatial spillover. Agriculture, Ecosystems & Environment, 253, 148-156.​10.1016/j.agee.2017.11.002
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Agriculture Ecosystems & EnvironmentEERIDCFE
Mathieu J.*, Caro G.~ & Dupont L.* (2018) Methods for studying earthworm dispersal. Applied Soil Ecology, 123 : 339-34410.1016/j.apsoil.2017.09.006
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Rego‐Costa, A., Débarre, F.*, & Chevin, L. M. (2018). Chaos and the (un) predictability of evolution in a changing environment. Evolution, 72(2), 375-385.10.1111/evo.13407EvolutionEERIDCFE
Srikanthasamy T.~, Leloup J.*, N’Dri A.-B., Barot S.*, Gervaix J., Koné A.W., Koffi K.F., Le Roux X., Raynaud X.*, Lata J.-C.* (2018) Contrasting effects of grasses and trees on microbial N-cycling in an African humid savanna. Soil Biochemistry and Biology, 117: 153-163.10.1016/j.soilbio.2017.11.016
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N’dri, A. B.`, Fongbe, M.`, Soro, T. D.`, Gignoux, J.*, Kone, M.`, Dosso, K.`, N’Dri, J.K.`, Koné, N.A.`,Barot, S.* (2018). Principaux indices de l’intensité du feu dans une savane Guinéenne d’Afrique de l’Ouest. International Journal of Biological and Chemical Sciences, 12(1), 266.10.4314/ijbcs.v12i1.21
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International Journal of Biological and Chemical SciencesEMSDCFE
Soro, Y.`, N’Dri, A. B.`, Bakayoko, A.`, & Gignoux, J.* (2018). Analyse de la végétation dans un écotone Forêt-Savane d’Afrique de l’Ouest dans un contexte de boisement des savanes. Revue de l’Environnement et de la Biodiversité – PASRES, 3, 54–72.Revue de l’Environnement et de la Biodiversité – PASRESEMSDCFE
Fougeyrollas R.~, Dolejšová K., Křivánek J., Sillam-Dussès D.*, Roisin Y., Hanus R., Roy V. *(2018) Dispersal and mating strategies in two neotropical soil-feeding termites, Embiratermes neotenicus and Silvestritermes minutus (Termitidae, Syntermitinae). Insectes Sociaux, 65, 251-262.10.1007/s00040-018-0606-y
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Terrigeol A.°,Indorf M.F.°,Jouhanique T.°,Tanguy F.°,Hoareau D.°,Rahimian V.°,Agésilas-Lequeux K.°,Baues R.°,Noualhguet M.°,Cheraiet A.°,Miedziejewski A.°, Bazot S., Lata J.C.*, Mathieu J.*, Hannot C., Dreuillaux J.M., Zanella A. (2018) Study of soil–vegetation relationships on the Butte Montceau in Fontainebleau, France: Pedagogical exercise and training report. Applied Soil Ecology, 123: 646-658​10.1016/j.apsoil.2017.07.021Applied Soil EcologyEMSDCFE ; EERIDCFE
Djukic I., et al.,Lata J.C.*, et al.,Yé L.~`, et al. (2018) Early stage litter decomposition across biomes. Science of the Total Environment, 628-629: 1369–1394​10.1016/j.scitotenv.2018.01.012
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Science of the Total EnvironmentEMSDCFE
Milcu A.; Puga-Freitas R*.; Ellison A.M., Blouin M., Scheu S., Girin T., Freschet G.T., Rose L., Scherer-Lorenzen M., Barot S*., Lata J-C*., Cesarz S., Eisenhauer N., Gigon A*.,Weigelt A., Hansart A., Greiner A., Pando A*., Gessler A.,  Grignani C., Assandri D., Gleixner G., Le Galliard J-F*., Urban-Mead K., Laura Zavattaro L., MüllerM.E.H., LangeM., Martin Lukac M., Bonkowski M., Mannerheim N., Buchmann N.,  Butenschoen O., Rotter P., Seyhun R., Devidal S., Kayler Z., and J Roy J.(2018).Genotypic variability enhances the reproducibility of an ecological study.  Nature Ecology and Evolution. 2, p279–28710.1038/s41559-017-0434-x
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Taheri S.~, Pelosi C.,Dupont L.* (2018) Harmful or useful ? A case study of the exotic peregrine earthworm morphospeciesPontoscolex corethrurus. Soil Biology and Biochemistry, 116: 277-28910.1016/j.soilbio.2017.10.030
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Soil Biology and BiochemistryBioDISDCFE
Gounand I.*, Harvey E., Little C.J., and Altermatt F. (2018) Meta-ecosystems 2.0: rooting the theory into the field. Trends in Ecology and Evolution, 33(1): 36-4610.1016/j.tree.2017.10.006​
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Trends in Ecology and EvolutionEERIDCFE
N’Dri, A. B.`, Gignoux, J.*, & Konaté, S.` (2018). Food Preferences and Foraging Strategies of Wood-Feeding Termites in a West African Savanna. Current Science, 114(01), 186.10.18520/cs/v114/i01/186-192
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Current ScienceEMSDCFE
Hansen S.’, Roets F.’, Seymour C.L.’, Thébault E.*, van Veen F.J.F., Pryke J.S.’ (2018) Alien plants have greater impact than habitat fragmentation on native insect flower visitation networks. Diversity and Distributions, 24, 58-68.10.1111/ddi.12656Diversity and DistributionsEERIDCFE
Robinne F.-N., Bladon K.D., Miller C., Parisien M.-A., Mathieu J.*, Flannigan M.D. (2018)A spatial evaluation of global wildfire-water risks to human and natural systems. Science of the Total Environment, 610-611:1193-120610.1111/mec.14102
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Science of the Total EnvironmentEERIDCFE
​Agapit, C.~, Gigon, A.*, Puga-Freitas, R.*, Zeller, B., Blouin, M. Plant-earthworm interactions: influence of age and proportion of casts in the soil on plant growth, morphology and nitrogen uptake. Plant Soil 424, 49–61 (2018).10.1007/s11104-017-3544-y
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Plant SoilEcoPhySIPE ; BioDISDCFE
​Tromeur, E.~ and Loeuille, N.* (2017), Balancing yield with resilience and conservation objectives in harvested predator–prey communities. Oikos, 126: 1780-1789

10.1111/oik.03985
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OikosEERIDCFE
Abed R, Kohls K, Leloup J*, De Beer D (2018) Abundance and diversity of aerobic heterotrophic microorganisms and their interaction with cyanobacteria in the oxic layer of an intertidal hypersaline cyanobacterial mat. FEMS Microbiol Ecol 9810.1093/femsec/fix183
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FEMS Microbiology EcologyEMSDCFE
Nel L.’, Pryke J.S.’, Carvalheiro L.G., Thébault E.*, van Veen F.J.F., Seymour C.L.’ (2017) Exotic plants growing in crop field margins provide little support to mango crop flower visitors. Agriculture, Ecosystems & Environment, 250, 72−80.10.1016/j.agee.2017.09.002Agriculture Ecosystems & EnvironmentEERIDCFE
Médoc, V., Thuillier, L.° & Spataro, T.* (2018) Opportunistic omnivory impairs our ability to predict invasive species impacts from functional response comparisons. Biol Invasions, 20: 1307–1319​
10.1007/s10530-017-1628-5Biological InvasionsEERIDCFE
Niboyet, A.*, G. Bardoux*, S. Barot*, and J. M. G. Bloor. 2017. Elevated CO2 mediates the short-term drought recovery of ecosystem function in low-diversity grassland systems. Plant & Soil 420:289-302.10.1007/s11104-017-3377-8
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Plant & Soil EMSDCFE
Fourcade Y.*, Besnard A.G., Secondi J. (2018) Paintings predict the distribution of species, or the challenge of selecting environmental predictors and evaluation statistics. Global Ecology and Biogeography, 27: 245-256



10.1111/geb.12684
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Global Ecology & Biogeography​BioDISDCFE
Toussaint A., Van Gijsegem F.* (2017) Extension of the transposable bacterial virus family: two genomic organisations among phages and prophages with a Tn552-related transposase. Research in Microbiology, 169: 9

10.1016/j.resmic.2017.11.002
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Research in MicrobiologyCoMiCDCFE
Jouquet P*., Pando A*.; Aroui H*.; Harit A.`^; Capowiez Y.; Bottinelli N*.2017. Evidence from Mid-Infrared Spectroscopy (MIRS) that the biological fingerprints of Odontotermes obesus termite colonies change according to their geographical location and age. (2017). Insectes Sociaux 65:77–8410.1007/s00040-017-0589-0
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Insectes SociauxBioDISDCFE ; FESTSols_ZC
Deeb M.~, Desjardins T.*, Podwojewski P.*, Pando A.*, Blouin M., Lerch T.Z.* (2017) Interactive effects of compost, plants and earthworms on aggregation in constructed Technosols. Geoderma 305: 305–31310.1016/j.geoderma.2017.06.014
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GeodermaBioDISDCFE ; FESTSols_ZC
Nunan, N.*, 2017. The microbial habitat in soil: Scale, heterogeneity and functional consequences. Journal of Plant Nutrition and Soil Science 180, 425–429.​10.1002/jpln.201700184
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Journal of Plant Nutrition and Soil ScienceBioDISDCFE
​Loeuille, N., Le Mao, T. & Barot, S. Effects of plant evolution on nutrient cycling couple aboveground and belowground processes. Theor Ecol 10, 117–127 (2017)

10.1007/s12080-016-0315-y
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Theoretical EcologyEERIDCFE ; EMSDCFE
Ropars, L., Dajoz, I & Geslin, B. 2017. La ville un désert pour les abeilles sauvages ? J. Bot. Soc. Bot. France 79, 1‑7.
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Journal de Botanique Société Botanique de FranceEERIDCFE
Desaegher, J., Nadot, S, Dajoz, I & Colas, B. 2017. Buzz in Paris: Flower production and plant-pollinator interactions in plants from contrasted urban and rural origins. Genetica 10.1007/s10709-017-9993-7GeneticaEERIDCFE
Flacher, F.~, Hansard, A., Motard, E.*, Fofana, A.M.°, Vincent, O., Geslin, B.*, Dajoz, I.*, Raynaud, X.* (2017). Does competition with wind-pollinated species alter Echium plantagineum ’s attractiveness to a common pollinator Bombus terrestris ? Ecological Entomology 42:617–628.​10.1111/een.12426
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Ecological EntomologyEMSDCFE ; EERIDCFE
Nunan, N.*, Leloup, J.*, Ruamps, L.S.~, Pouteau, V., Chenu, C., 2017. Effects of habitat constraints on soil microbial community function. Scientific Reports 7.10.1038/s41598-017-04485-z
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Scientific ReportsBioDISDCFE ; EMSDCFE
Gignoux, J.*, Chérel, G.~, Davies, I. D., Flint, S. R., & Lateltin, E.* (2017). Emergence and complex systems: The contribution of dynamic graph theory. Ecological Complexity, 31, 34–49. 10.1016/j.ecocom.2017.02.006
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Ecological ComplexityEMSDCFE
Iltis, C.°, Spataro, T.*, Wattier, R.  & Médoc, V. (2018) Parasitism may alter functional response comparisons: a case study on the killer shrimp  Dikerogammarus villosus and two non-invasive gammarids.  Biol Invasions,20: 619–632​10.1007/s10530-017-1563-5
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Biological InvasionsEERIDCFE
Pengerud A., Dignac M.-F.*, Certini G., Strand L.T., Forte C., Rasse D.P. (2017) Soil organic matter molecular composition and state of decomposition in three locations of the European Arctic. Biogeochemistry 135: 277–292. 10.1007/s10533-017-0373-2
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BiogeochemistryCoMiCDCFE
Talovskaya A., Yazikov E., Filimonenko E., Lata J.C.*, Kim J.B., Shakhova T. (2017) Characterization of solid airborne particles deposited in snow in the vicinity of urban fossil fuel thermal power plant (Western Siberia). Environmental Technology, 39: 2288-230310.1080/09593330.2017.1354075
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Environmental TechnologyEMSDCFE
Foti L.~, Dubs F.^, Gignoux J.*, Lata J.C.*, Lerch T. Z*, Mathieu J.*, Nold F., Nunan N.*,Raynaud X.*, Abbadie L.*, Barot S.* (2017) Trace metal concentrations along a gradient of urban pressure in forest and lawn soils of the Paris region (France). Science of the Total Environment, 598: 938-94810.1016/j.scitotenv.2017.04.111
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Science of the Total EnvironmentEMSDCFE ; BioDISDCFE ; EERIDCFE
Subbarao G.V., J. Arango`, K. Masahiro, A.M. Hooper, T. Yoshihashi, Y. Ando, K. Nakahara, S. Deshpande`, I. Ortiz-Monasterio, M. Ishitani, M. Peters, N. Chirinda, L. Wollenberg, J.C. Lata*, B. Gerard, S. Tobita, I.M. Rao`, H.J. Braun, V. Kommerell, J. Tohme, M. Iwanaga (2017) Genetic mitigation strategies to tackle agricultural GHG emissions: The case for biological nitrification inhibition technology. Plant Science, 262: 165-16810.1016/j.plantsci.2017.05.004
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Plant ScienceEMSDCFE
Yé L.~`, Lata J.-C.*, Masse D., Nacro H.B.`, Kissou R.`, Diallo N.H.`, Barot S.* (2017) Contrasted effects of annual and perennial grasses on soil chemical and biological characteristics of a grazed Sudanian savanna. Applied Soil Ecology, 113: 155-16510.1016/j.apsoil.2017.02.003
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Applied Soil EcologyEMSDCFE
Barot S.*, Allard V., Cantarel A., Enjalbert J., Gauffreteau A., Goldringer I., Lata J.-C.*, Le Roux X., Niboyet A.*, Porcher E. (2017) Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development, 37: 13. 10.1007/s13593-017-0418-x
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Agronomy for Sustainable DevelopmentEMSDCFE
Yé L.~`, Lata J.-C.*, Masse D., Nacro H.B.`, Barot S.* (2017) Effects of grazing on herbaceous biomass and chemical and biological parameters of soils in a shrub savanna in Burkina Faso. International Journal of Biological and Chemical Sciences, 10(6): 2539-2554International Journal of Biological and Chemical SciencesEMSDCFE
Rochelle Newall, E*., L. Boithias, C. Bouet*, O. Malam-Issa*, A. Pierret*, O. Ribolzi & E. Roberts, 2017. Accès à l’eau, usage des terres et dégradation des sols: un triptyque qui favorise l’émergence des maladies diarrhéiques. In Loireau, M. & N. Ben Khatra (eds) Désertification et Système Terre, de la (re)connaissance à l’action//Liason Energie-Francophonie. vol 106. Institut de la Francophonie pour le Developpement Durable et l’Organisation International de la Francophonie, Quebec, Canada, 83-85.
🔗 HAL Liason Energie-FrancophonieF2ZCSols_ZC ; CoMiCDCFE
​Harvey E., Gounand I.*, Little C.J., Fronhofer E.A., and Altermatt F. (2017). Upstream trophic structure modulates downstream community dynamics via resources subsidies. Ecology and Evolution, 7:5724-573110.1002/ece3.3144
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Ecology and EvolutionEERIDCFE
Fourcade Y.*, Ranius T., Öckinger E. (2017) Temperature drives abundance fluctuations, but spatial dynamics is constrained by landscape configuration: implications for climate-driven range shift in a butterfly. Journal of Animal Ecology, 86: 1339-1351



10.1111/1365-2656.12740Journal of Animal EcologyBioDISDCFE
de Parseval, H.~, Barot, S.*, Gignoux, J.*, Lata, J.-C.*, & Raynaud, X.* (2017). Modelling facilitation or competition within a root system: importance of the overlap of root depletion and accumulation zones. Plant and Soil, 419(1–2), 97–111. 10.1007/s11104-017-3321-y
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Plant & Soil EMSDCFE
Liu, Y.^, S. Barot*, Y. A. El-Kassaby, and N. Loeuille*. 2017. Impact of temperature shifts on the joint evolution of seed dormancy and size. Ecology and Evolution 7:26–37.10.1002/ece3.2611
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Ecology and EvolutionEMSDCFE ; EERIDCFE
​Gounand I.*, Harvey E., Ganesanandamoorthy P., and Altermatt F. (2017) Subsidies mediate interactions between communities across space. Oikos, 126(7): 972-97910.1111/oik.03922
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OikosEERIDCFE
Morris C., Barny MA.*, Berge O., Kinkel LL.,  and Lacroix C.(2017) Frontiers for research on the ecology of plant pathogenic bacteria: Fundamentals for sustainability. Mol plant pathol : 18(2)10.1111/mpp.12508
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Molecular Plant PathologyCoMiCDCFE
​Arditi R.^, Bersier L.-F., Rohr R.P. (2017) The perfect mixing paradox and the logistic equation: Verhulst vs. Lotka: Reply.  Ecosphere, 8 (7), e0189410.1002/ecs2.1894EcosphereEERIDCFE
Sotton B., Paris A., Le Manach S., Blond A., Lacroix G.*, Millot A., Duval C., Huet H., Qiao Q., Labrut S., Chiapetta G., Vinh J., Catherine A., Marie B. (2017). Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses. Scientific Reports, 7, Article number: 4051
10.1038/s41598-017-04423-z
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Scientific ReportsEERIDCFE
​Pantel, J. H., Bohan, D., Calcagno, V., David, P., Duyck, P. F., Kamenova, S., Loeuille, N.*, Mollot, G., Romanuk, T., Thébault, E.*, Tixier, P., Massol, F. 2017. 14 questions for invasion in ecological networks. Advances in Ecological Research. in press. 56, 293-340.

10.1016/bs.aecr.2016.10.008
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Advances in Ecological ResearchEERIDCFE
​David, P., Thébault, E.*, Anneville, O., Duyck, P. F., Chapuis, E. & Loeuille, N.* 2017. Impacts of invasive species on food webs: a review of empirical data. Advances in Ecological Research. 56, 1-60

10.1016/bs.aecr.2016.10.001
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Advances in Ecological ResearchEERIDCFE
Geslin, B., Gauzens, B., Baude, M., Dajoz, I., Fontaine, C., Henry, M., Ropars, L., Rollin, O, Thébault, E. & Vereecken, N. J. 2017. Massively Introduced Managed Species and their consequences for plant-pollinator interactions. Advances in Ecological Research volume 56: Networks of Invasion (edited by David Bohan, Alex Dumbrell and Francois Massol).10.1016/bs.aecr.2016.10.007
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Advances in Ecological ResearchEERIDCFE
Ribolzi O., Evrard O., Huon S.*, de Rouw A.*, Silvera N.*, Latsachack K.O.`, Soulileuth B.`, Lefèvre I., Pierret A.*, Lacombe G., Sengtaheuanghoung O.`, Valentin C.* (2017) From shifting cultivation to teak plantation: effect on overland flow and sediment yield in a montane tropical catchment. Scientific Reports, 7: 398710.1038/s41598-017-04385-2
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Scientific ReportsF2ZCSols_ZC ; CoMiCDCFE ; FESTSols_ZC
Leloup, J.*, Baude, M.~, Nunan, N.*, Meriguet, J., Dajoz, I.*, Le Roux, X., Raynaud, X.* (2018) Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma 317, 1–7.10.1016/j.geoderma.2017.12.018
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GeodermaEMSDCFE ; BioDISDCFE ; EERIDCFE
Vergnes A.^, Blouin M., Muratet A, Lerch T.Z.*, Mendez-Millan M., Rouelle-Castrec M., Dubs F.^ (2017) Initial conditions during Technosol implementation shape earthworms and ants diversity. Landscape and Urban Planning 159 : 32-4110.1016/j.landurbplan.2016.10.002
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Landscape and Urban PlanningBioDISDCFE
Kim, M.`, L. Boithias, K. H. Cho`, N. Silvera, C. Thammahacksa, K. Latsachack*, E. Rochelle-Newall*, O. Sengtaheuanghoung, A. Pierret*, Y. A. Pachepsky & O. Ribolzi, 2017. Hydrological modeling of Fecal Indicator Bacteria in a tropical mountain catchment. Water Research 119:102-113 10.1016/j.watres.2017.04.038
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Water ResearchCoMiCDCFE ; F2ZCSols_ZC
Le, T. P. Q., V. N. Dao°, E. Rochelle-Newall*, J. Garnier, X. Lu, G. Billen, T. T. Duong, C. T. Ho, H. Etcheber, T. M. H. Nguyen~, T. B. N. Nguyen, B. T. Nguyen, N. Da Le & Q. L. Pham, 2017. Total organic carbon fluxes of the Red River system (Vietnam). Earth Surface Processes and Landforms 42:1329-1341 10.1002/esp.4107Earth Surface Processes and LandformsCoMiCDCFE
Manivanh, L`., A. Pierret*, S. Rattanavong`, O. Kounnavongsa, Y`. Buisson, I. Elliott, J.-L. Maeght*, K. Xayyathip`, J. Silisouk`, M. Vongsouvath`, R. Phetsouvanh`, P. N. Newton, G. Lacombe, O. Ribolzi, E. Rochelle-Newall* & D. A. B. Dance, 2017. Burkholderia pseudomallei in a lowland rice paddy: seasonal changes and influence of soil depth and physico-chemical properties. Scientific Reports 7:3031 10.1038/s41598-017-02946-z
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Scientific ReportsCoMiCDCFE ; F2ZCSols_ZC
Lerch T.Z.*, Chenu C., Dignac M.-F.*, Barriuso E., Mariotti A. (2017) Biofilm vs planktonic lifestyle: consequences on pesticide 2,4-D biodegradation by Cupriavidus necator JMP134.  Frontiers in Microbiology 8 : 9010.3389/fmicb.2017.00904
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Frontiers in MicrobiologyBioDISDCFE ; CoMiCDCFE
MANIVANH, L.’, PIERRET A.*, RATTANAVONG, S.’, KOUNNAVONGSA, O.’, BUISSON, Y., ELLIOTT, I., MAEGHT, J.-L.*, XAYYATHIP, K., SILISOUK, J.’, VONGSOUVATH, M.’, PHETSOUVANH, R.’, NEWTON, P.N., LACOMBE, G., RIBOLZI, O., ROCHELLE-NEWALL*, E., DANCE, D.A.B. (2017) Burkholderia pseudomallei in a lowland rice paddy: seasonal changes and influence of soil depth and physico-chemical properties. Scientific Reports – Nature, 2017, 7, p. art. 3031 [11 p.].10.1038/s41598-017-02946-z​
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Scientific ReportsCoMiCDCFE
Meunier F., Rothfuss Y., Bariac T.*, Biron P.*, Richard P., Durand JL., Couvreur C.,  Vanderborght J., Javaux. M. (2017): Measuring and modeling hydraulic lift of Lolium multiflorum under semi-controlled conditions using water stable isotopes. Vadose Zone Journal 17(1)10.2136/vzj2016.12.0134
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Vadose Zone JournalEMSDCFE
IMDIRAKPHOL S.’, ZAZZO A., AUETRAKULVIT P.’, TIAMTINKRIT C.’, PIERRET A.*, FORESTIER H., ZEITOUN V. (2017) The perforated stones of the Doi Pha Kan burials (Northern Thailand): A Mesolithic singularity? Comptes rendus Palevol (2017) Volume 16, Issue 3, April–May 2017, Pages 351-36110.1016/j.crpv.2016.12.003
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Comptes rendus PalevolCoMiCDCFE
KIM, J.H., FOURCAUD, T., JOURDAN, C., MAEGHT*, J.-L., MAO, Z., METAYER, J., MEYLAN, L., PIERRET A*., RAPIDEL, B., ROUPSARD, O., de ROUW, A.*, VILLATORO SANCHEZ, M., WANG, Y., STOKES, A. (2017) Vegetation drives slope stability and its variability through hydrological impacts. Geophys. Res. Lett., 44: 4897-4907. 10.1002/2017gl073174
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Geophysical Research LettersCoMiCDCFE ; F2ZCSols_ZC
Dusza, Y.~, Barot, S.*, Kraepiel, Y.*, Lata, J.-C.*, Abbadie, L.*, Raynaud, X.* (2017) Multifunctionality is affected by interactions between green roof plant species, substrate depth, and substrate type. Ecology and Evolution 7:2357–2369.10.1002/ece3.2691
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Ecology and EvolutionEMSDCFE
Massol F., Altermatt F., Gounand I.*, Gravel D., Leibold M.A., and Mouquet N. (2017) How life-history traits affect ecosystem properties: effects of dispersal in meta-ecosystems. Oikos, 126(4): 532-54610.1111/oik.03893​
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OikosEERIDCFE
Van Gijsegem F.*, Pédron J.*, Patrit O., Simond-Côte E., Maia-Grondard A., Pétriacq P., Gonzalez R., Blottière L.^, Kraepiel Y.* (2017) Manipulation of ABA content in Arabidopsis thaliana modifies sensitivity and oxidative stress response to Dickeya dadantii and influences peroxidase activity. Front. Plant Sci.: 8 : 45610.3389/fpls.2017.00456
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Frontiers in Plant ScienceEMSDCFE ; CoMiCDCFE
​Fougeyrollas R.~, Křivánek J., Roy V.*, Dolejšová K., Frechault S.*, Roisin Y., Hanus R., Sillam-Dussès D. (2017). Asexual queen succession mediates an accelerated colony life cycle in the termite Silvestritermes minutus. Molecular Ecology, 26, 3295–330810.1111/mec.14095
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Molecular EcologyBioDISDCFE ; ESEAEEcoEvo
Pancrace P., Barny MA.*, Ueoka R., Calteau A., Scalvenzi T., Pédron J.*, Barbe V., Piel J., Humbert JF.*, Gugger M (2017) Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains. Scientific reports.7, 4118110.1038/srep41181
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Scientific ReportsCoMiCDCFE
Cronin AL, Loeuille N*, Monnin T* (2016) Strategies of offspring investment and dispersal in a spatially structured environment: a theoretical study using ants. BMC Ecology 16:410.1186/s12898-016-0058-z
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BMC EcologyESEAEEcoEvo ; EERIDCFE
​Vojvoda, J., Lamy, D.*, Sintes, E., Garcia, J.A.L, Turk, V., Herndl, G.J. (2014) Seasonal variation in marine-snow-associated and ambient-water prokaryotic communities in the northern Adriatic Sea. Aquatic Microbial Ecology, 73:211-224.Aquatic Microbial EcologyCoMiCDCFE
​Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D.*, Reinthaler, T., Poulton, N.J., Masland, E.D.P., Lluesma Gomez, M., Sieracki, M.E., DeLong, E.F., Herndl, G.J, Stepanauskas, R. (2011).Ubiquitous dark ocean bacteria fix carbon and contain RuBisCO and sulfur oxidation genes. Science, 333:1296-1300ScienceCoMiCDCFE

🔗 All publications  of iEES Paris

Members of department

Nom PrénomCorpsEmployeurDépartement et ÉquipeAdresseTéléphoneMél
ABBADIE LucPUSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 416
(+33) 01 44 27 25 45luc.abbadie@sorbonne-universite.fr
ARDICHVILI Alice
Doctorante
Sorbonne Université
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 218
(+33) 01 44 27 47 30
alice.ardichvili@etu.sorbonne-universite.fr
ARDITI ROGERCDD Chercheur Bénévole Sorbonne UniversitéÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 520
(+33) 01 44 27 25 69roger.arditi@sorbonne-universite.fr
BARNY Marie-AnneDRINRAEÉquipe CoMiC du Département DCFEJussieu
Tour 44-45 – 4 étage – bureau : 408
(+33) 01 44 27 32 94marie-anne.barny@upmc.fr
BAROT SebastienDRIRDÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 208
(+33) 01 44 27 47 42sebastien.barot@ird.fr
BEAU Remi

CR
CNRS
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 220
(+33) 06 75 20 18 08
remi.beau@upmc.fr
BELIN Marie
Doctorante
Sorbonne Université
Équipe EERI du Département DCFE ; Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 218
(+33) 01 44 27 47 30
marie.belin@sorbonne-universite.fr
BEN ARI TamaraCR
INRAE
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
44-45 – 2e étage – bureau : 220
(+33) 0
tamara.ben-ari@inrae.fr
BEN MOUSSA HajarDoctoranteSorbonne UniversitéÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 23 49hajar.ben_moussa@etu.upmc.fr
BIRON PhilippeIRSorbonne UniversitéÉquipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 510
(+33) 01 44 27 34 03
philippe.biron@upmc.fr
CARMIGNAC DavidAICNRSÉquipe EERI du Département DCFE,
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 206
(+33) 01 44 27 47 95david.carmignac@upmc.fr
CAVAUD LouiseDoctoranteUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 2e étage – bureau : 211
(+33) 01 45 17 16 14louise.cavaud@univ-paris-est.fr
CHARBERET Samuel

Doctorant
Sorbonne Université
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49
samuel.charberet@sorbonne-universite.fr
CHARLES DOMINIQUE TristanCRCNRSÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 203?
(+33) 01 44 27 53 28tristan.charles-dominique@sorbonne-universite.fr
CHATELAIN PaulDoctorantSorbonne UniversitéÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49paul.chatelain@upmc.fr
CORTIER Thomas
Doctorant
Université Aix-Marseille
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 508
thomas.cortier@mio.osupytheas.fr
CZUPPON PeterPost-doctorantSorbonne UniversitéÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 11 11peter.czuppon@upmc.fr
DAJOZ IsabellePUUniv. de ParisÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 518
(+33) 01 44 27 38 09isabelle.dajoz@univ-paris-diderot.fr
DAKOS VasileiosCRCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 99
(+33) 01 44 27 34 03vasilis.dakos@umontpellier.fr
DIGNAC Marie-FranceDRINRAEÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 504
(+33) 01 44 27 51 71marie-france.dignac@inrae.fr
DUPONT LiseMCUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 4e étage – bureau : 418
(+33) 01 45 17 16 64lise.dupont@u-pec.fr
DEBARRE FlorenceCRCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 522
(+33) 01 44 27 56 71florence.debarre@upmc.fr
EL MEKDAD FatimaDoctoranteSorbonne UniversitéÉquipe BioDIS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 218
(+33) 01 44 27 47 30fatima.el_mekdad@sorbonne-universite.fr
ESCHENBRENNER JeromeDoctorantCNRSÉquipe EERI du Département DCFE,
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49jerome.eschenbrenner@upmc.fr
FAUVIAU Arthur
Doctorant
Sorbonne Université
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 218
(+33) 01 44 27 47 30
arthur.fauviau@sorbonne-universite.fr
FINAND BasileDoctorantSorbonne UniversitéÉquipe EERI du Département DCFE,
Équipe ESEAE du Département EcoEvo
Campus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 508
(+33) 01 44 27 42 55basile.finand@etu.upmc.fr
FOURCADE YoanMCUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 4e étage – bureau : 422
(+33) 01 45 17 14 69yoan.fourcade@u-pec.fr
GASQUE Mégane
Doctorante
IRD
Équipe CoMiC du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 0
(+33) 06 25 95 72 52
megane.gasque@ird.fr
GAETAN Juliette
Doctorante
Université de Paris
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau :
juliette.gaetan@upmc.fr
GENDREAU EmmanuelMCSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 212
(+33) 01 44 27 41 07emmanuel.gendreau@upmc.fr
GENET PatriciaMCUniversité de ParisÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 518
(+33) 01 44 27 38 09patricia.genet@univ-paris-diderot.fr
GERGONNE DamienDoctorantCNRSÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 2e étage – bureau : 211
(+33) 06 40 40 80 89gergonne.damien@gmail.com
GIGNOUX JacquesDRCNRSÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 210
(+33) 01 44 27 41 36jacques.gignoux@upmc.fr
GIGON AgnesIEUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 4e étage – bureau : 422
(+33) 01 45 17 14 69gigon@u-pec.fr
GOUNAND IsabelleCRCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 514
(+33) 01 44 27 45 26 isabelle.gounand@sorbonne-universite.fr
HARALDSSON MatildaPost-doctoranteDepartment of Marine Sciences, Gothenburg University, Suéde
Équipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49matilda.haraldsson@marine.gu.se
HUMBERT Jean-FrancoisDRINRAEÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 511
(+33) 01 44 27 41 67jean-francois.humbert@upmc.fr
KLAY Lena
Doctorante
Sorbonne Université
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49
lena.klay@upmc.fr
KRAEPIEL YvanMCSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 204
(+33) 01 44 27 41 32yvan.kraepiel@sorbonne-universite.fr
LACROIX GerardCRCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 514
(+33) 01 44 27 34 22gerard.lacroix@upmc.fr
LAMY Dominique
MC
Sorbonne Université
Équipe CoMiC du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 408
(+33) 01 44 27 32 94
dominique.lamy@sorbonne-universite.fr
LATA Jean-ChristopheMCSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 208
(+33) 01 44 27 47 42jean-christophe.lata@upmc.fr
LATELTIN EricIRCNRSÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 210
(+33) 01 44 27 41 36eric.lateltin@upmc.fr
LELOUP JulieMCSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 411
(+33) 01 44 27 38 26julie.leloup@upmc.fr
LERCH ThomasMCUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEIRD Bondy
bâtiment A – RDC – bureau : 1
(+33) 01 48 02 79 33thomas.lerch@u-pec.fr
LOEUILLE NicolasPUSorbonne UniversitéÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 504
(+33) 01 44 27 36 10nicolas.loeuille@upmc.fr
MARCANGELI YoanTSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 206
(+33) 01 44 27 47 95yoan.marcangeli@sorbonne-universite.fr
MATHIEU JérômeMCSorbonne UniversitéÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 514
(+33) 01 44 27 34 22jerome.mathieu@upmc.fr
MITROI VeronicaCDD ChercheurSorbonne UniversitéÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 410
(+33) 01 44 27 41 67veronica.mitroi@enpc.fr
MOTARD EricTCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 516
(+33) 01 44 27 70 58eric.motard@upmc.fr
NIBOYET AudreyMCAgroParisTechÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 214
(+33) 01 44 27 53 28audrey.niboyet@agroparistech.fr
NUNAN NaoiseCRCNRSÉquipe BioDIS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 212
(+33) 01 44 27 41 06 naoise.nunan@upmc.fr
PANDO AnneIRIRDÉquipe BioDIS du Département DCFEExpatriée à NAFRI/DALaM VIENTIANE LAOS
Bat A – RDC – bureau : 01
(+33) 01 48 02 55 90anne.pando@ird.fr
PEDRON JacquesMCSorbonne UniversitéÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 410
(+33) 01 44 27 41 67jacques.pedron@upmc.fr
PERRARD AdrienMCUniv. de ParisÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 518
(+33) 01 40 79 38 09adrien.perrard@univ-paris-diderot.fr
PIERRET AlainCRIRDÉquipe CoMiC du Département DCFEDepartement of Agricultural Land Management (DALaM)
– – – étage – bureau : –
(+ 856) 20 52 97 60 04alain.pierret@ird.fr
POTIER Hugo
Doctorant
Sorbonne Université
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 56-66 – 4e étage – bureau : 420
(+33) 01 44 27 51 79
hugo.potier@upmc.fr
QIN Bo
Doctorant
CNRS
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 07 57 77 82 10
bo.qin@upmc.fr
RAYNAUD XavierMCSorbonne UniversitéÉquipe EMS du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 204
(+33) 01 44 27 41 32xavier.raynaud@upmc.fr
ROCHA ARAUJO Jose HilarioDoctorantEst-EnsembleÉquipe BioDIS du Département DCFEIRD Bondy
bâtiment B – Sous-sol étage – bureau : 8
(+33) 01 80 25 698jose.araujo@ird.fr
ROCHELLE-NEWALL EmmaDRIRDÉquipe CoMiC du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 404
(+33) 01 44 27 38 26
emma.rochelle-newall@ird.fr
ROY VirginieMCUniv. Paris Est CréteilÉquipe BioDIS du Département DCFEUniv. Paris Est Créteil
bâtiment P – 4e étage – bureau : P4-420
(+33) 01 45 17 16 14roy@u-pec.fr
SEBILO Mathieu
MC
Sorbonne Université
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 56-66 – 4e étage – bureau : 7
(+33) 01 44 27 50 04
mathieu.sebilo@upmc.fr
SPATARO ThierryMCAgroParisTechÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 520
(+33) 01 44 27 25 69spataro@agroparistech.fr
THEBAULT ElisaCRCNRSÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 5e étage – bureau : 522
(+33) 01 44 27 56 71elisa.thebault@upmc.fr
TRAORE Amara Sidiki
Doctorant
Ministère de l’Enseignement Supérieur et de la Recherche Scientifique Ivoirien
Équipe EMS du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 2e étage – bureau : 228
(+33) 14 42 74 73 30
traoreamarasidiki@gmail.com
TREVISAN DominiqueIRINRAEÉquipe CoMiC du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 1
(+33) 01 44 27 32 11dominique.trevisan@inrae.fr
YACINE YoussefDoctorantAgroParisTechÉquipe EERI du Département DCFECampus Pierre et Marie Curie – Paris 5e
Tour 44-45 – 4e étage – bureau : 413
(+33) 01 44 27 32 49youssef.yacine@polytechnique.edu
ZANINOTTO VincentDoctorantVille de Paris
Équipe EERI du Département DCFE
Campus Pierre et Marie Curie – Paris 5e
Tour 44-34 – 5e étage – bureau : 512
(+33) 01 44 27 42 58
vincent.zaninotto@etu.sorbonne-universite.fr

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